GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002883-TA|BGIBMGA002883-PA|IPR001017|Dehydrogenase, E1
component, IPR005475|Transketolase, central region
         (625 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    27   0.61 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.5  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 26.6 bits (56), Expect = 0.61
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 272 VNRILANREKMVNEGVADWAMGEALAFGSLLRDKIHIRFTG 312
           VN ++ N   +V  G+  WA G A++FG+   DK++  F G
Sbjct: 62  VNIMMKNVVDIVLGGLTYWAFGFAMSFGT---DKLNNPFIG 99


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 397 TFICNGESKWVCQSG 411
           TF+C G+ KW   SG
Sbjct: 231 TFLCKGDGKWYLPSG 245


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 362  ILGYEVGYSYSSPQLLTIWEAQYGDFADTAQPVFDTFICNGESKWVCQSGIVVQLPHGVD 421
            ILGY VGY  SS +   ++E    DF+          I N   K   Q  +VVQ  + V 
Sbjct: 1009 ILGYYVGYRLSSSEKPYMFETV--DFSKEDGKEHHLQIMN--LKTYTQYSVVVQAFNKV- 1063

Query: 422  GAGP 425
            G+GP
Sbjct: 1064 GSGP 1067


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,239
Number of Sequences: 429
Number of extensions: 7743
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 625
length of database: 140,377
effective HSP length: 62
effective length of query: 563
effective length of database: 113,779
effective search space: 64057577
effective search space used: 64057577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)