GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002879-TA|BGIBMGA002879-PA|IPR013026|Tetratricopeptide
region, IPR001440|Tetratricopeptide TPR_1
         (646 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   4.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   4.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   5.9  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 45  ANCYEQLTAMHPDVPEYRLYFAQALYEASMFEESFKVTMQINNPELERKVIKLQSA 100
           A CY  L+ + PDV +Y  Y  Q +   S+F+      +     ++   VIKL+ A
Sbjct: 316 ATCY--LSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPFIK-DIYETVIKLEGA 368


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 45  ANCYEQLTAMHPDVPEYRLYFAQALYEASMFEESFKVTMQINNPELERKVIKLQSA 100
           A CY  L+ + PDV +Y  Y  Q +   S+F+      +     ++   VIKL+ A
Sbjct: 22  ATCY--LSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPFIK-DIYETVIKLEGA 74


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 563 LENLAKHLIVVKDHTI 578
           L NL KHL V +DH I
Sbjct: 113 LGNLTKHLQVFRDHLI 128


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 98  QSAIKYSEDDTATAKGLVDSYPQDDPDKDINLGCLLFKENHFEEALQKFSRSLNVVGFNA 157
           Q+AI+  +       G+      D  D  IN+      + + E A++KFS       FN 
Sbjct: 23  QNAIRMGQSICMAKTGINKQIINDVNDGKINIEDENV-QLYIECAMKKFSFVDKDGNFNE 81

Query: 158 HLHYNIAVCYFKLKEFPQALKHITLVIERGIRDHPELAVGMQAEISEVKSVGNTL 212
           H+   IA  +    E  Q +   + + +  +  H ++    Q  I++ K++ + L
Sbjct: 82  HVSREIAKIFLNENEINQLITECSAISDTNV--HLKITKIFQC-ITKFKTINDIL 133


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,158
Number of Sequences: 429
Number of extensions: 6905
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 4
length of query: 646
length of database: 140,377
effective HSP length: 62
effective length of query: 584
effective length of database: 113,779
effective search space: 66446936
effective search space used: 66446936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)