GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002875-TA|BGIBMGA002875-PA|undefined
         (134 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC129994-1|AAI29995.1| 1232|Homo sapiens TBC1 domain family, mem...    30   2.9  
AB014576-1|BAA31651.1| 1262|Homo sapiens KIAA0676 protein protein.     30   2.9  
BT006663-1|AAP35309.1|  685|Homo sapiens midline 2 protein.            29   6.7  
BC017707-1|AAH17707.1|  685|Homo sapiens midline 2 protein.            29   6.7  
AY625004-1|AAT48105.1|  685|Homo sapiens TRIM1 beta protein.           29   6.7  
AL034399-3|CAI42074.1|  685|Homo sapiens midline 2 protein.            29   6.7  
AF196481-1|AAF07341.1|  685|Homo sapiens RING finger protein pro...    29   6.7  

>BC129994-1|AAI29995.1| 1232|Homo sapiens TBC1 domain family, member
           9B (with GRAM domain) protein.
          Length = 1232

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 56  NGAESDVRTPGTKERLSQLRKHIHQNHLATGTCKQIYDEEKTSMYCCILDSLTYSLLGEL 115
           N    D+   G KE++ +   HIH      G C  +Y   KT     +L  +  SL GEL
Sbjct: 462 NSPMEDLGAKGAKEKMKEESWHIHFFEYGRGVC--MYRTAKTR--ALVLKGIPESLRGEL 517

Query: 116 SLI 118
            L+
Sbjct: 518 WLL 520


>AB014576-1|BAA31651.1| 1262|Homo sapiens KIAA0676 protein protein.
          Length = 1262

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 56  NGAESDVRTPGTKERLSQLRKHIHQNHLATGTCKQIYDEEKTSMYCCILDSLTYSLLGEL 115
           N    D+   G KE++ +   HIH      G C  +Y   KT     +L  +  SL GEL
Sbjct: 474 NSPMEDLGAKGAKEKMKEESWHIHFFEYGRGVC--MYRTAKTR--ALVLKGIPESLRGEL 529

Query: 116 SLI 118
            L+
Sbjct: 530 WLL 532


>BT006663-1|AAP35309.1|  685|Homo sapiens midline 2 protein.
          Length = 685

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 18  FGINSAKFRDPTYTGSVEKYMLYIQ----LLAPNLKQTQYLANGAESDVR 63
           F I+S + +   +TG      LY      ++ PN+KQ  Y  +G +S  R
Sbjct: 409 FSISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTR 458


>BC017707-1|AAH17707.1|  685|Homo sapiens midline 2 protein.
          Length = 685

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 18  FGINSAKFRDPTYTGSVEKYMLYIQ----LLAPNLKQTQYLANGAESDVR 63
           F I+S + +   +TG      LY      ++ PN+KQ  Y  +G +S  R
Sbjct: 409 FSISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTR 458


>AY625004-1|AAT48105.1|  685|Homo sapiens TRIM1 beta protein.
          Length = 685

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 18  FGINSAKFRDPTYTGSVEKYMLYIQ----LLAPNLKQTQYLANGAESDVR 63
           F I+S + +   +TG      LY      ++ PN+KQ  Y  +G +S  R
Sbjct: 409 FSISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTR 458


>AL034399-3|CAI42074.1|  685|Homo sapiens midline 2 protein.
          Length = 685

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 18  FGINSAKFRDPTYTGSVEKYMLYIQ----LLAPNLKQTQYLANGAESDVR 63
           F I+S + +   +TG      LY      ++ PN+KQ  Y  +G +S  R
Sbjct: 409 FSISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTR 458


>AF196481-1|AAF07341.1|  685|Homo sapiens RING finger protein
           protein.
          Length = 685

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 18  FGINSAKFRDPTYTGSVEKYMLYIQ----LLAPNLKQTQYLANGAESDVR 63
           F I+S + +   +TG      LY      ++ PN+KQ  Y  +G +S  R
Sbjct: 409 FSISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTR 458


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,728,139
Number of Sequences: 224733
Number of extensions: 804329
Number of successful extensions: 1413
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1413
Number of HSP's gapped (non-prelim): 7
length of query: 134
length of database: 73,234,838
effective HSP length: 82
effective length of query: 52
effective length of database: 54,806,732
effective search space: 2849950064
effective search space used: 2849950064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)