GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002875-TA|BGIBMGA002875-PA|undefined
         (134 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   3.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.0  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 55 ANGAESDVRTPGTKERLSQLRKHIHQNHLAT 85
          ANG     RT  T+ +  +L K  H N   T
Sbjct: 4  ANGEVKRQRTSYTRYQTLELEKEFHFNRYLT 34


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 46  PNLKQTQYLANGAESDVRTPGTKERLSQLRKHIHQ 80
           P L++  +   G    V   G  E L++L +H+ +
Sbjct: 211 PTLEELGFDTEGLLPPVWVGGESEALARLERHLER 245


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,066
Number of Sequences: 429
Number of extensions: 1569
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 134
length of database: 140,377
effective HSP length: 52
effective length of query: 82
effective length of database: 118,069
effective search space:  9681658
effective search space used:  9681658
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)