GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002873-TA|BGIBMGA002873-PA|undefined
         (63 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   0.66 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   0.66 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    19   3.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    19   4.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   4.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 0.66
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 45   FTRSVEGIPYVVNFCK 60
            FTR  +G+P  V +C+
Sbjct: 1193 FTRVGDGVPTTVTYCQ 1208


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 0.66
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 45   FTRSVEGIPYVVNFCK 60
            FTR  +G+P  V +C+
Sbjct: 1189 FTRVGDGVPTTVTYCQ 1204


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 31  VPNNNIRTVGLRYNFTRSVEGIPYVVNFCKKI 62
           + NNN      +YN+  + + + Y +N+ ++I
Sbjct: 90  IHNNN----NYKYNYNNNCKKLYYNINYIEQI 117


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 15  DIFKKAYLENVVTYIQVPNNNIR 37
           DI+ + Y +N  TY+++  + ++
Sbjct: 160 DIYCEKYEKNGETYLRIKKHAVK 182


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 15  DIFKKAYLENVVTYIQVPN 33
           D++ ++Y E  V +  +PN
Sbjct: 778 DLYSQSYAEVGVLFASMPN 796


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.145    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,728
Number of Sequences: 429
Number of extensions: 717
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 63
length of database: 140,377
effective HSP length: 43
effective length of query: 20
effective length of database: 121,930
effective search space:  2438600
effective search space used:  2438600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)