GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002872-TA|BGIBMGA002872-PA|undefined
         (90 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   4.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   4.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   9.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 3   GDSRN-QGNSDFERSQFSGKHSIIPGSIC 30
           GD  N Q N +F+   FS + ++   S C
Sbjct: 168 GDVSNYQANGEFDLVNFSARRNVEYYSCC 196


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 4   DSRNQGNSDFERSQFSGKHSIIPGSICSRVRSE 36
           DS  +  ++      S   S  P S+CS  RSE
Sbjct: 579 DSGIESGTEKPDKPASSSASSAPTSVCSSPRSE 611



 Score = 20.2 bits (40), Expect = 4.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 35  SEYLVEGRSPGTRFDFRPDGALGVYSVFLPAASRFGSSELLFGALSN 81
           S+YL+ G SP +   +    A    S     AS   ++ +L G  SN
Sbjct: 814 SDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLSGCPSN 860


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 64  PAASRFGSSELLFGALSNDG 83
           P A+ +GS E +  + +++G
Sbjct: 560 PVATMYGSDEEIINSSNDEG 579


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.138    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,744
Number of Sequences: 429
Number of extensions: 838
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 90
length of database: 140,377
effective HSP length: 48
effective length of query: 42
effective length of database: 119,785
effective search space:  5030970
effective search space used:  5030970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
S2: 37 (19.0 bits)