GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002871-TA|BGIBMGA002871-PA|undefined
         (64 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   0.28 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   2.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 0.28
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 16 WLPDKEQRKLFITQCL 31
          W PD + + + +TQCL
Sbjct: 10 WCPDNDGKMVDLTQCL 25


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 21  EQRKLFITQCLFD--AGIEATTLGAAIGGAKYCNTDP 55
           E R   +T  LF    G+ A + G A GG      DP
Sbjct: 575 EYRNGEVTTPLFTPAVGVAAASAGGAGGGGARSYVDP 611


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,751
Number of Sequences: 429
Number of extensions: 596
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 64
length of database: 140,377
effective HSP length: 44
effective length of query: 20
effective length of database: 121,501
effective search space:  2430020
effective search space used:  2430020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)