GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002870-TA|BGIBMGA002870-PA|IPR013020|DNA repair helicase
Rad3, IPR006554|DEXDc2, IPR014001|DEAD-like helicases, N-terminal,
IPR006555|Helicase c2, IPR014013|Helicase superfamily 1 and 2
ATP-binding, DinG/Rad3-type, IPR010614|DEAD_2
         (968 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    25   2.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    25   2.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 736 FYKNAEMALPAPKLKPLMSNESNRQQSVNVGG-VSFPITVAR 776
           FY  A   LP PK  P + +    Q    V G VS+P    R
Sbjct: 196 FYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVR 237


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 736 FYKNAEMALPAPKLKPLMSNESNRQQSVNVGG-VSFPITVAR 776
           FY  A   LP PK  P + +    Q    V G VS+P    R
Sbjct: 196 FYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVR 237


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,868
Number of Sequences: 429
Number of extensions: 12784
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 2
length of query: 968
length of database: 140,377
effective HSP length: 64
effective length of query: 904
effective length of database: 112,921
effective search space: 102080584
effective search space used: 102080584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)