GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002869-TA|BGIBMGA002869-PA|IPR000488|Death,
IPR000157|Toll-Interleukin receptor, IPR011029|DEATH-like
         (393 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    32   0.010
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 31.9 bits (69), Expect = 0.010
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 16/156 (10%)

Query: 147  VPITIDDDEGYEQHYDAFVLYADEDREFV-----EEMINRLGGMFQICTKEKLLPS--HS 199
            +P   D D   E+ YD +V Y+  D +FV      E+ +   G+ ++C   + LP    +
Sbjct: 1054 MPACFDSDR--ERLYDCYVCYSPNDEDFVLHSLAVELEHGAAGL-RLCLHHRDLPCVLRA 1110

Query: 200  TEYAPVAQLISQRCQYIILVYSPAFLRSPANTFYRDYAQAISIESRNRVFEHKLIPI--V 257
            +  APV        + +++V +  FL +  + F  ++  A+    R R  +  ++     
Sbjct: 1111 STPAPVVLEAVHASRRVLIVLTRNFLLTEWSRF--EFRAALHEALRGRTAQLIIVQAENA 1168

Query: 258  YQHCELPVHLKYY--TNLKYTTSATFNFWDKLKQSL 291
            Y   EL   L+ Y  T     T     FW++L+ ++
Sbjct: 1169 YPEVELDRELRPYLRTAAAILTWNEKRFWERLRYAI 1204


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 139 IISNEDVYVPITIDDDEGYEQHYDAFVLYADEDREFV 175
           I  N DV+ P     ++   +HY AFV ++   R  V
Sbjct: 453 IYPNPDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCV 489


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,486
Number of Sequences: 429
Number of extensions: 4758
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 393
length of database: 140,377
effective HSP length: 59
effective length of query: 334
effective length of database: 115,066
effective search space: 38432044
effective search space used: 38432044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)