GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002866-TA|BGIBMGA002866-PA|undefined
         (55 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   1.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    18   8.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 39   VDLSTRPGDQGRD 51
            VDLS  P D+GR+
Sbjct: 1375 VDLSPSPSDRGRN 1387


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 41  LSTRPGDQGRD 51
           +S+RPG  GR+
Sbjct: 175 ISSRPGQCGRE 185


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,497
Number of Sequences: 429
Number of extensions: 349
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 55
length of database: 140,377
effective HSP length: 35
effective length of query: 20
effective length of database: 125,362
effective search space:  2507240
effective search space used:  2507240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)