GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002864-TA|BGIBMGA002864-PA|IPR007217|Per1-like
         (228 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 50  HCMWSAVKKLENAGRQVVKFHGKVCMNAWVWSMVFHTRDTPFTEFMDYTCALSMVMGLYV 109
           H  W++   +  A   V+   G V   A V  ++FH RDTP          + ++ G+ V
Sbjct: 508 HIRWNSAFAIAPA---VISCLGIVATMA-VACLLFHHRDTPVVRASGRELTIILLAGVLV 563


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 50  HCMWSAVKKLENAGRQVVKFHGKVCMNAWVWSMVFHTRDTPFTEFMDYTCALSMVMGLYV 109
           H  W++   +  A   V+   G V   A V  ++FH RDTP          + ++ G+ V
Sbjct: 598 HIRWNSAFAIAPA---VISCLGIVATMA-VACLLFHHRDTPVVRASGRELTIILLAGVLV 653


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 127 LTGSLLYFATHVRLLATGVVDYDY 150
           LTG L YF+T +  +   V+   Y
Sbjct: 300 LTGCLYYFSTTINPILYNVMSAKY 323


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 132 LYFATHVRLLATGVVDYDYNMTVNVIFGAVGSFIWLVYAGYL 173
           L FAT    + +G +    N     +F  + + ++ V AG++
Sbjct: 125 LSFATTSTTIVSGAMAERCNFKAYCLFSFLNTIVYCVPAGWI 166


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.137    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,447
Number of Sequences: 429
Number of extensions: 2475
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 228
length of database: 140,377
effective HSP length: 56
effective length of query: 172
effective length of database: 116,353
effective search space: 20012716
effective search space used: 20012716
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 42 (21.0 bits)