GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002863-TA|BGIBMGA002863-PA|IPR000210|BTB,
IPR013069|BTB/POZ, IPR011705|BTB/Kelch-associated,
IPR008979|Galactose-binding like
         (669 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      44   4e-06
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          37   6e-04

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 44.0 bits (99), Expect = 4e-06
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 39  EYSDVTLIVEGQRIPAHKVILAASSDYFRALLYGGMREANQAEVELQ-APLQAFKALLRY 97
           ++ DVTL  +G+ + AH+V+L+A S YFR LL           + LQ        AL+ +
Sbjct: 30  DFVDVTLACDGRSLKAHRVVLSACSPYFRELLKS--TPCKHPVIVLQDVAFSDLHALVEF 87

Query: 98  VYSGHFPGHMG--LSMLREDTVLDMLGLAHQ 126
           +Y G    H     S L+   VL + GL  Q
Sbjct: 88  IYHGEVNVHQRSLSSFLKTAEVLRVSGLTQQ 118


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 36.7 bits (81), Expect = 6e-04
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 25  SHLSEHIGSLCLSSEYSDVTLIVEGQRIPAHKVILAASSDYFRALLYGGMREANQAEVEL 84
           S+++     L  +  + DVTL      + AHKV+L+A S YF+ LL     +     +  
Sbjct: 20  SNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQ 79

Query: 85  QAPLQAFKALLRYVYSG 101
                  K ++ +VY G
Sbjct: 80  DVCFNDLKFIIEFVYRG 96


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,102
Number of Sequences: 429
Number of extensions: 7771
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 2
length of query: 669
length of database: 140,377
effective HSP length: 62
effective length of query: 607
effective length of database: 113,779
effective search space: 69063853
effective search space used: 69063853
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)