GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002858-TA|BGIBMGA002858-PA|IPR011028|Cyclin-like
         (283 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.4  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 253 WKFELFWSTISVFNW 267
           W F L W+   +F W
Sbjct: 176 WLFSLGWTIAPMFGW 190


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 52  DDGEDDEVICSEWAASGGMELKQL 75
           D+G++ +   S+W   GG   K++
Sbjct: 220 DEGKESKTKLSQWRKDGGTVKKKV 243


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 253 WKFELFWSTISVFNW 267
           W F L W+   +F W
Sbjct: 52  WLFSLGWTIAPMFGW 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.132    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,064
Number of Sequences: 429
Number of extensions: 2212
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 283
length of database: 140,377
effective HSP length: 57
effective length of query: 226
effective length of database: 115,924
effective search space: 26198824
effective search space used: 26198824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)