GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002855-TA|BGIBMGA002855-PA|IPR002610|Peptidase S54,
rhomboid
         (330 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.8  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   6.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.4  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 107 TIIFIMVCIHLLVSEEVRDMLEWTPEKWRT 136
           T++ +   I  L  E  +D  ++ PE+W T
Sbjct: 417 TVVLLHTWIAGLNEENFKDAKKYLPERWTT 446


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 105 IVTIIFIMVCIHLLVSEEVRDMLEWTPEKWRTE 137
           IV I    +C++ +  EE++  L    E  +TE
Sbjct: 4   IVVIFAFCICVNAMTIEELKIQLHDVQEICKTE 36


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)

Query: 290 FTGENEGKRYIVIARIVSALVLLLGVIM 317
           + GE++  +  +IA  + A+V+LL +I+
Sbjct: 522 YVGEDDNMQVRIIAGAIVAVVVLLVIII 549


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,402
Number of Sequences: 429
Number of extensions: 2201
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 330
length of database: 140,377
effective HSP length: 58
effective length of query: 272
effective length of database: 115,495
effective search space: 31414640
effective search space used: 31414640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 44 (21.8 bits)