GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002853-TA|BGIBMGA002853-PA|undefined
         (66 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   2.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   2.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    19   6.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   6.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           18   8.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    18   8.9  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query: 17  SPDANHNYDIAAR 29
           SPD N NY   AR
Sbjct: 676 SPDHNGNYSCVAR 688


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 2.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 2   FPLCVVRTDVATRRRSPDANHNYDIAARV 30
           F L     DVAT+   P    +Y +  R+
Sbjct: 111 FSLLYYEFDVATKEPPPWETDSYKLIGRI 139


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 21  NHNYDIAARVTMDTHINGTNNYN 43
           ++NY  +     + + N  NNYN
Sbjct: 319 SNNYKYSNYNNYNNNYNNYNNYN 341


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
          protein.
          Length = 588

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 24 YDIAARVTMDTHINGTNNYNGVR 46
          Y +  R  MD++ +G  +  G++
Sbjct: 31 YQVYPRSFMDSNSDGIGDLKGIK 53


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 18  PDANHNYD 25
           PD+ H YD
Sbjct: 542 PDSEHGYD 549


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 40  NNYNGVRGTQRTLLRDRV 57
           N+Y   R T +   RDR+
Sbjct: 287 NSYRKYRETSKERSRDRI 304


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,279
Number of Sequences: 429
Number of extensions: 890
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 66
length of database: 140,377
effective HSP length: 44
effective length of query: 22
effective length of database: 121,501
effective search space:  2673022
effective search space used:  2673022
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)