GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002850-TA|BGIBMGA002850-PA|undefined
         (96 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   2.7  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    24   4.7  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    24   4.7  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    24   4.7  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    23   6.2  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    23   6.2  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    23   6.2  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    23   8.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    23   8.2  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 17  STAQHSAAQRSTAQHSTAQRSAVSHVGSRTYVVQQTAGPTALLRSLLML-----GTSTRM 71
           ST Q   +     ++++     VS  GS   +     GPTA+  SL        G    +
Sbjct: 125 STKQPPQSADKQVENTSTSNPPVSVEGSEN-LASSVGGPTAVGVSLDEAQNDFNGAKDHL 183

Query: 72  SQGNNTTYDQKLFSSTYD 89
           S G NT      F ST++
Sbjct: 184 SNGVNTVVPDSTFRSTFE 201


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 45  RTYVVQQTAGPTALLRSLLMLGTSTRMSQGNNTTYDQKLFSSTYDEES 92
           +TY  + T+ PT+L+R L + G++  +   +   +  + F +   EE+
Sbjct: 456 KTYRPEFTSQPTSLVRELHVYGSAVPVHSRDPKKFQHQGFGTLLLEEA 503


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 33  TAQRSAVSHVGSRTYVVQQTAGPTALL 59
           TAQ  + + +GS T  +  TA P ALL
Sbjct: 360 TAQEQSETWIGSSTIHLGDTAVPNALL 386


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 1347

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 14 RYVSTAQHSAAQRSTAQHSTAQRSAVSHVGSRTYVVQQTAGPTALLRSL 62
          RY  T  H A   +    ++  RS + H G   +V  + +G TAL R++
Sbjct: 50 RYGRTVLHIAVSENK---NSFVRSLLQHKGIDVFVQDEESGYTALHRAI 95


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 52  TAGPTALLRSLLMLGTSTRMSQGNNTTYD 80
           T   TALL + L L   T ++  +N  YD
Sbjct: 415 TTNDTALLEATLCLSPGTGIANTDNGAYD 443


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 64  MLGTSTRMSQGNNTTYDQKLFSSTYD 89
           +LG S  MSQG+  T  +   S+TYD
Sbjct: 950 VLGLSP-MSQGDKMTSSESTVSTTYD 974


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 27  STAQHSTAQRSAVSHVGSRTYVVQQTAGPTALLRSLLMLGTSTRMSQGNNTTYDQKLFSS 86
           S  QHS+AQ +   HV + T+       P++    +L    +   +   N T D     S
Sbjct: 881 SAIQHSSAQNTLDDHVNTTTH-----ESPSSAFTEILERLKAIEQNISTNHTNDSAALKS 935

Query: 87  TYD 89
           + D
Sbjct: 936 SED 938


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 18  TAQHSAAQRSTAQHSTAQRSAVSHVGSRTYVVQQTAGPTALLRSLLMLGTSTRMSQGNNT 77
           T+  ++   ST   +    +AV+   + TY V  T G + +  +     TST+ S   +T
Sbjct: 195 TSTKASTVTSTEATTVTTTTAVTVTATETYTVTATNGGSTITSTGASTVTSTQPSTVTST 254


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 16/44 (36%), Positives = 18/44 (40%)

Query: 14  RYVSTAQHSAAQRSTAQHSTAQRSAVSHVGSRTYVVQQTAGPTA 57
           R +S+A   AAQ S    S  Q  A   V     V Q  A P A
Sbjct: 495 RDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVA 538


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.119    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 365,887
Number of Sequences: 5004
Number of extensions: 9975
Number of successful extensions: 38
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 9
length of query: 96
length of database: 2,362,478
effective HSP length: 62
effective length of query: 34
effective length of database: 2,052,230
effective search space: 69775820
effective search space used: 69775820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)