GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002850-TA|BGIBMGA002850-PA|undefined
         (96 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043433-1|AAC05656.1|  231|Anopheles gambiae putative pupal-spe...    23   1.9  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      22   4.4  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    22   4.4  

>AF043433-1|AAC05656.1|  231|Anopheles gambiae putative
          pupal-specific cuticular proteinprotein.
          Length = 231

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 6  TLVVKDVMRYVSTAQHS--AAQRSTAQHSTAQRSAVSHVGS 44
          TLV       +  A H   A   ST QH    R A+ HVGS
Sbjct: 10 TLVAAASAGLLPVAHHGSIATSHSTIQHHA--RPAIQHVGS 48


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 19  AQHSAAQRSTAQHSTAQRSAVSHVGSRTYVVQQTAGPT 56
           A    A + T++  T Q +  S VG+R Y+  +    T
Sbjct: 404 ADFGLAVKYTSESDTIQIANNSRVGTRRYMAPEVLSET 441


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 31  HSTAQR--SAVSHVGSRTYVVQQTAGPTALLRSLLML 65
           H TA+    ++   G  TY++    GP  +L  L  L
Sbjct: 511 HYTARHPIGSLKRFGFHTYLIDMVQGPYPVLNGLCKL 547


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.119    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,072
Number of Sequences: 2123
Number of extensions: 2282
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 96
length of database: 516,269
effective HSP length: 55
effective length of query: 41
effective length of database: 399,504
effective search space: 16379664
effective search space used: 16379664
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)