GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002850-TA|BGIBMGA002850-PA|undefined
         (96 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    28   1.1  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    25   6.1  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    25   8.0  

>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 6    TLVVKDVMRYVSTAQHSAAQRSTAQHSTAQRSAVSHVGSRTYVVQQTAG 54
            T  V  + +Y S   H  + R    H+T   + +SH+G     VQ   G
Sbjct: 1546 TRTVSGMDQYSSHNVHEPSPRPVGYHTTTTTTNISHIGQSHEPVQPVMG 1594


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 17  STAQHSAAQRSTAQHSTAQRSAVSHVGSRTYVVQQTAGPTALLRSLLMLGTSTRMSQGNN 76
           S++    A  ++   ST   S+ S VGS T    Q++ P++ + +    G++      ++
Sbjct: 753 SSSPQPTASSTSVPSSTGATSSGSTVGSSTMGSTQSSLPSSTMTNTGSTGSTVTNQLASS 812

Query: 77  TTY 79
           +TY
Sbjct: 813 STY 815


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 16   VSTAQHSAAQRSTAQHSTAQRSAVSH--VGSRTYVVQQTAGPTALLRSLLMLGTSTRMSQ 73
            V ++  S A  STA  ST   S+ S   VGS        A  T+   S + LG+S+  S 
Sbjct: 1751 VVSSTASPAASSTAPSSTGTMSSTSSGTVGSTMSQSSTAASTTSHTGSTVTLGSSSTSSN 1810

Query: 74   GNNTTYDQKLFSS 86
              +T+    + S+
Sbjct: 1811 QMSTSQGSSVGST 1823


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.119    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,833
Number of Sequences: 27539
Number of extensions: 52808
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 4
length of query: 96
length of database: 12,573,161
effective HSP length: 70
effective length of query: 26
effective length of database: 10,645,431
effective search space: 276781206
effective search space used: 276781206
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)