GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002850-TA|BGIBMGA002850-PA|undefined
         (96 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    28   0.023
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   1.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   2.7  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   3.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   3.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   3.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   6.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    19   8.1  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 0.023
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 65  LGTSTRMSQGNNTTYDQKLFSSTYDEESYLL 95
           + T+  ++QG  TT   K+F S +DEE   L
Sbjct: 275 VSTTKAINQGFRTTKSSKMFGSRFDEERLTL 305


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 12  VMRYVSTAQHSAAQRSTAQHSTAQRSAVSHVGSRTYV 48
           VMR  +T    +   S  Q+   +RS  SH G R  V
Sbjct: 354 VMRRYNTPSKRSDYDSRPQYQIDKRSMGSHHGQRVMV 390


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 10  KDVMRYVSTAQHSAAQRSTAQHSTAQRSAVSHVGS 44
           K+  R+   A+ S    S A+H   +    +H+GS
Sbjct: 571 KNQCRHYLDAKSSVQNYSLAKHQLKEAFVKAHLGS 605


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)

Query: 75  NNTTYDQKLFSSTYDEESY 93
           N   YD K    T D ESY
Sbjct: 229 NTFDYDPKFTKMTIDGESY 247


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)

Query: 75  NNTTYDQKLFSSTYDEESY 93
           N   YD K    T D ESY
Sbjct: 229 NTFDYDPKFTKMTIDGESY 247


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)

Query: 75  NNTTYDQKLFSSTYDEESY 93
           N   YD K    T D ESY
Sbjct: 229 NTFDYDPKFTKMTIDGESY 247


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 74  GNNTTYDQKLFSSTY 88
           G N T   KL+  TY
Sbjct: 347 GRNPTVQNKLYEETY 361


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.4 bits (38), Expect = 8.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 75  NNTTYDQKLFSSTY 88
           NN  Y++KL+   Y
Sbjct: 107 NNNNYNKKLYYKNY 120


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.119    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,187
Number of Sequences: 429
Number of extensions: 772
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 96
length of database: 140,377
effective HSP length: 49
effective length of query: 47
effective length of database: 119,356
effective search space:  5609732
effective search space used:  5609732
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)