GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002849-TA|BGIBMGA002849-PA|IPR001007|von Willebrand
factor, type C, IPR009041|Proteinase inhibitor, PMP and SGCI,
IPR009030|Growth factor, receptor
         (1038 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    38   4e-04
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    26   1.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    26   1.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   2.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   2.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   2.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   2.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   2.7  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   3.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 232 SEENSCSQCFCLRGAVRCHTVQCAPPLRGCTPFV----VPGECC 271
           S +N C+ CFC  G  +C T++C  P   C   +    VPGECC
Sbjct: 688 SSDNPCTTCFCENGNNKCFTMEC--PQVTCPDNMKLEKVPGECC 729


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 206 YSPHKNSTHDCQVKGAWVPEGQRVK 230
           ++P+ N + DC     WVP+  R++
Sbjct: 3   WNPNTNISEDCLYLNIWVPQRLRIR 27


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 261 CTPFVVPGECCPRHYHCEHGQ 281
           C    +P E C ++Y C HG+
Sbjct: 478 CKQDFMPHELCDKYYRCVHGK 498


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 15/52 (28%), Positives = 19/52 (36%)

Query: 446 NDIITDRTLGFDESETFTINVTSSLVTNTSQTKPPIVSASKPIPNDMVDAAN 497
           ND  +D     DES   T N+         +TK   V    PI  +    AN
Sbjct: 8   NDTYSDDNFSDDESSPLTENIYGGSTRTVQETKGWDVFRDPPIKEESGSMAN 59


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 15/52 (28%), Positives = 19/52 (36%)

Query: 446 NDIITDRTLGFDESETFTINVTSSLVTNTSQTKPPIVSASKPIPNDMVDAAN 497
           ND  +D     DES   T N+         +TK   V    PI  +    AN
Sbjct: 8   NDTYSDDNFSDDESSPLTENIYGGSTRTVQETKGWDVFRDPPIKEESGSMAN 59


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 559 PTSDTKDTLFATRREDVYPPKYPVFISNKGAEYPSLLPEINLSNSAFGSSSNDLEYT-VP 617
           P+SD  D L + +   V+P + P   + K  +     P++ LS   +  S  D  +   P
Sbjct: 86  PSSDMADVLLSLKHAVVHPGQSP---AEKYDQQHLYHPQVLLSPGGYSGSLCDQGFAQQP 142

Query: 618 TALDDQANVPKVMTA---KPSSEPSKYEVDTPAISLFSPP 654
                  NV   MT     PSS     E+  P +   + P
Sbjct: 143 MFPSMSVNVSMNMTMHGYHPSSSYPANEISCPQVQWSATP 182


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 15/52 (28%), Positives = 19/52 (36%)

Query: 446 NDIITDRTLGFDESETFTINVTSSLVTNTSQTKPPIVSASKPIPNDMVDAAN 497
           ND  +D     DES   T N+         +TK   V    PI  +    AN
Sbjct: 8   NDTYSDDNFSDDESSPLTENIYGGSTRTVQETKGWDVFRDPPIKEESGSMAN 59


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 15/52 (28%), Positives = 19/52 (36%)

Query: 446 NDIITDRTLGFDESETFTINVTSSLVTNTSQTKPPIVSASKPIPNDMVDAAN 497
           ND  +D     DES   T N+         +TK   V    PI  +    AN
Sbjct: 8   NDTYSDDNFSDDESSPLTENIYGGSTRTVQETKGWDVFRDPPIKEESGSMAN 59


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 780 DDTRVKVEKFSIKQKNDSQSQTDNQHELKTEQNIKPVEVNSVKD 823
           DD  V       K + D +  TD    +K+E+N K ++ + + D
Sbjct: 160 DDALVSDSDDREKDEEDKRDDTDMHGRIKSERNGKDLDDDDMND 203


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,596
Number of Sequences: 317
Number of extensions: 9829
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 12
length of query: 1038
length of database: 114,650
effective HSP length: 64
effective length of query: 974
effective length of database: 94,362
effective search space: 91908588
effective search space used: 91908588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)