GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002849-TA|BGIBMGA002849-PA|IPR001007|von Willebrand
factor, type C, IPR009041|Proteinase inhibitor, PMP and SGCI,
IPR009030|Growth factor, receptor
         (1038 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.79 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    27   0.79 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.79 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   5.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   9.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.1 bits (57), Expect = 0.79
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 390 EGTVKIMVNGTINCTAELSSTKI 412
           +G   + +NGT+NCT+ ++S+ +
Sbjct: 145 DGGANLNLNGTVNCTSSIASSGV 167


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 0.79
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 203 QHAYSPHKNSTHDCQVKGAWVPEGQRVKKSEENS 236
           +  ++P+ N + DC     WVP+  R++   + S
Sbjct: 113 EEMWNPNTNISEDCLYLNIWVPQKYRLRHKGDGS 146


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 27.1 bits (57), Expect = 0.79
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 203 QHAYSPHKNSTHDCQVKGAWVPEGQRVKKSEENS 236
           +  ++P+ N + DC     WVP+  R++   + S
Sbjct: 113 EEMWNPNTNISEDCLYLNIWVPQKYRLRHKGDGS 146


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 80  RWFSDGGEVDTREA-CLQCICSSGALT 105
           +W S+GG  DTR A C   +   GA+T
Sbjct: 32  KWLSEGGN-DTRSADCTLRVLDPGAIT 57


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 679 PAPGPSIPHLTTSMQLDVAKECITSDGRRVKDG 711
           P  GP +P      ++D  KE  T   +  KDG
Sbjct: 204 PEKGPKVPEKKKEDEIDEGKESKTKLSQWRKDG 236


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,551
Number of Sequences: 429
Number of extensions: 12461
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 6
length of query: 1038
length of database: 140,377
effective HSP length: 65
effective length of query: 973
effective length of database: 112,492
effective search space: 109454716
effective search space used: 109454716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)