GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002848-TA|BGIBMGA002848-PA|undefined
         (95 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   1.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   1.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   2.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 63  GNQRINLYEILGDQVPSEVINNL 85
           GN+  +LY+ LG       INNL
Sbjct: 355 GNKLADLYKSLGPDSVYSFINNL 377


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 63  GNQRINLYEILGDQVPSEVINNL 85
           GN+  +LY+ LG       INNL
Sbjct: 247 GNKLADLYKSLGPDSVYSFINNL 269


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 73  LGDQVPSEVINNLQS 87
           LGD+V  +V+N+L S
Sbjct: 114 LGDEVIIDVVNHLSS 128


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.133    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,320
Number of Sequences: 317
Number of extensions: 543
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 95
length of database: 114,650
effective HSP length: 48
effective length of query: 47
effective length of database: 99,434
effective search space:  4673398
effective search space used:  4673398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.7 bits)
S2: 37 (19.0 bits)