GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002848-TA|BGIBMGA002848-PA|undefined
         (95 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    30   0.052
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   0.28 
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   0.85 
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    25   2.6  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    24   4.5  
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    24   4.5  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   7.9  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    23   7.9  

>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 30.3 bits (65), Expect = 0.052
 Identities = 14/47 (29%), Positives = 29/47 (61%)

Query: 20  QREGAVFSNEAIKQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQR 66
           +++ ++FS+   ++ + T+ IPKD     ++ G++LA Y+    NQR
Sbjct: 117 EKQVSIFSHLDWRRRRTTENIPKDIHPAVIRLGLKLANYKIFGSNQR 163


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 0.28
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 42  KDAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQVP-SEVINNLQSQIDQVGR 94
           KD++++KVQEG  L A Q +     +    +     P  E  N+L+ QI+Q+ R
Sbjct: 329 KDSLLKKVQEGASL-AMQRVQNKHDLEKKRLQSAIQPLQEENNSLKQQIEQLQR 381


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 0.85
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 32  KQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQVPSEVINNLQSQI 89
           +Q   T+ + K+++  K   G +    +S+P  Q     +    Q P EV  ++QS +
Sbjct: 763 QQTTETKHLRKESIPSKQPSGGQQLRQESLPSQQSSESKQSTQHQQPVEVQKSIQSDV 820


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 20  QREGAVFSNEAIKQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQVPS 79
           +REG   S++ I+ A   +++ K + I++  +   LAA Q    N+ + L    G +   
Sbjct: 464 EREGYYDSDQEIEDADEEEVLEKASRIREKNKLTMLAARQKKIKNRPV-LPRTAGIRTLD 522

Query: 80  EVINNLQS 87
           E+ ++LQS
Sbjct: 523 ELQSSLQS 530


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 40  IPKDAVIQKVQEGIELAAYQSIPGNQRINLYEIL 73
           + K+AV+QK++E  + +   S+ G +R+ + E L
Sbjct: 280 VEKEAVLQKMKEQQKYSCSCSVCGRKRLAIEEEL 313


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 28  NEAIKQAQNTQLIPKDA 44
           NE  KQ +NT+ IP D+
Sbjct: 250 NEVYKQPENTKSIPNDS 266


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 29  EAIKQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQ 65
           + I+  Q+TQ     + +Q VQ G+     Q +   Q
Sbjct: 391 QPIQPVQSTQYYQPSSPVQPVQNGVPAPPMQPVQSTQ 427


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 62  PGNQRINLYEILGDQVPSEVINNLQSQIDQV 92
           P ++RI L  I  DQVP     N     D+V
Sbjct: 505 PSDKRIPLIAISSDQVPPTFFTNNDDFKDKV 535


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 351,520
Number of Sequences: 5004
Number of extensions: 11153
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 9
length of query: 95
length of database: 2,362,478
effective HSP length: 62
effective length of query: 33
effective length of database: 2,052,230
effective search space: 67723590
effective search space used: 67723590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)