GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002848-TA|BGIBMGA002848-PA|undefined
         (95 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1420 + 26448009-26448085,26448302-26448394,26448634-264487...    27   2.2  
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957...    26   3.8  
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265...    26   3.8  
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408...    25   6.7  
05_01_0341 - 2679404-2680579                                           25   8.8  

>07_03_1420 +
           26448009-26448085,26448302-26448394,26448634-26448727,
           26448822-26448859,26448999-26449090,26449179-26449258,
           26449332-26449388,26449420-26449449,26449505-26449597,
           26449766-26449840,26449888-26449959
          Length = 266

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 42  KDAVIQKVQEGIELA-AYQSIPGNQRINLYEILGDQVPSEVINNLQSQI 89
           K  +I+++   + L   YQS  GN+RI L++   DQV  +    + S++
Sbjct: 85  KQLMIKELNSYVTLRKTYQSSLGNKRIELFDTGNDQVAEDNTVQMASEM 133


>03_03_0105 +
           14491198-14493636,14494793-14494957,14495647-14495760,
           14496223-14496487,14497164-14497237,14497851-14497928
          Length = 1044

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/24 (45%), Positives = 19/24 (79%)

Query: 64  NQRINLYEILGDQVPSEVINNLQS 87
           NQ++N  EI+ ++V +++ NNLQS
Sbjct: 448 NQKLNAGEIVEEKVGADMGNNLQS 471


>01_06_0529 -
           30026101-30026277,30026363-30026438,30026509-30026570,
           30026882-30027031,30027213-30027338,30028096-30028305,
           30028870-30028938,30029024-30029080,30029131-30029277,
           30029358-30029542,30029623-30029698,30029796-30029918,
           30030395-30030410,30031743-30032745,30033521-30033789,
           30034297-30034415
          Length = 954

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 30  AIKQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQVPSEVINNLQSQI 89
           ++K+ + ++  P   V++ +Q+ ++ A      G+Q  N +  +  Q+  E  +NL   I
Sbjct: 326 SLKEGKTSEFSPY--VVELLQQKLKAAKSHHQAGHQETNTHIQVYQQLTEEFQDNLGKLI 383

Query: 90  DQVGR 94
           ++ GR
Sbjct: 384 EESGR 388


>07_03_1756 -
           29239137-29239325,29239741-29240259,29240693-29240800,
           29240856-29241155,29241730-29241831,29243042-29243209,
           29243878-29243991,29244184-29244288,29244372-29244502,
           29244794-29244918,29245001-29245172,29245277-29245316,
           29245636-29245722,29245803-29245868,29246412-29246510,
           29246714-29246836,29247066-29247107,29247195-29247260,
           29247362-29247553,29247672-29247737,29248839-29249141
          Length = 1038

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 38  QLIPKDAVIQKVQEGIELAAYQSIPGNQR 66
           +L+ K+  I K+Q+ I  A  + I G+QR
Sbjct: 307 ELVKKEMEISKLQQSIAKAIEEKISGDQR 335


>05_01_0341 - 2679404-2680579
          Length = 391

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/31 (22%), Positives = 20/31 (64%)

Query: 42  KDAVIQKVQEGIELAAYQSIPGNQRINLYEI 72
           K ++  K+ +G  +AA+ + PG  ++++ ++
Sbjct: 212 KTSLYWKLDDGTRMAAFDAAPGKMKLSILDL 242


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.133    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,129
Number of Sequences: 37544
Number of extensions: 62298
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 5
length of query: 95
length of database: 14,793,348
effective HSP length: 70
effective length of query: 25
effective length of database: 12,165,268
effective search space: 304131700
effective search space used: 304131700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)