GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002848-TA|BGIBMGA002848-PA|undefined
         (95 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38421| Best HMM Match : Pox_A32 (HMM E-Value=0.022)                 28   1.3  
SB_15095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1)                27   3.0  
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               26   4.0  
SB_48714| Best HMM Match : TrmB (HMM E-Value=0.71)                     26   5.2  
SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008)            26   5.2  
SB_21574| Best HMM Match : T-box (HMM E-Value=0)                       26   5.2  
SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       25   6.9  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.9  
SB_18531| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.9  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            25   9.2  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  
SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)                   25   9.2  

>SB_38421| Best HMM Match : Pox_A32 (HMM E-Value=0.022)
          Length = 1144

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 45 VIQKVQEGIELAAYQSIPGNQRINLYEILGDQVPSEVINNL 85
          V+ K+ EG+ L     +PG+ R+  Y  +  Q  + V+NN+
Sbjct: 44 VVPKLSEGVTL-----VPGSLRVGFYLSISGQANNTVVNNV 79


>SB_15095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 69  LYEILGDQVPSEVINNLQSQIDQV 92
           LY  L  +VP EV+  LQ+++D++
Sbjct: 277 LYLALNKEVPDEVVQKLQAELDKM 300


>SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1)
          Length = 506

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 46 IQKVQEGIELAAYQSIPGNQRINLYEILGDQVPSEVINNLQSQIDQVGRN 95
          + K+ EG+ L     +PG+ R+     +  Q  + V+NN+   +++  RN
Sbjct: 8  VPKLSEGVTL-----VPGSLRVGFDLSISSQANNTVVNNVGRNLEKRSRN 52


>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 1093

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/63 (30%), Positives = 25/63 (39%)

Query: 25  VFSNEAIKQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQVPSEVINN 84
           V   +A KQ   T+ IP+ A  Q  +     A  Q   G Q  N          SE I N
Sbjct: 355 VTDTQASKQVTPTEKIPRSADKQASRTSSSTATIQGATGTQASNATTPTATFSRSEDIEN 414

Query: 85  LQS 87
           ++S
Sbjct: 415 VES 417


>SB_48714| Best HMM Match : TrmB (HMM E-Value=0.71)
          Length = 199

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 31  IKQAQNTQLIPKDAVIQKVQEGIELAAYQ 59
           +K  Q+T L+ K   ++KVQE +E+   Q
Sbjct: 97  LKTFQSTLLLKKQLEVEKVQEDLEIKRQQ 125


>SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008)
          Length = 659

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 32  KQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQVP 78
           ++ Q+T L+P D ++   Q          I GN  +N   + G+ VP
Sbjct: 173 EEIQSTDLVPGDVIVIPAQGATMHCDAALISGNCIVNESMLTGESVP 219


>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
          Length = 473

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 27  SNEAIKQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQR-INLY-EILGDQVPSEVINN 84
           SN ++ Q+      P D V Q+     E  +YQ+  G+Q  ++ Y  ++   V SE++NN
Sbjct: 243 SNSSLVQSARLDSQPLDPVFQRSSLLGEYLSYQNPVGDQGVVHRYPPLVQRMVNSELLNN 302

Query: 85  LQS 87
             S
Sbjct: 303 TNS 305


>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 38  QLIPKDAVIQKVQEGIE-LAAYQSIPGNQRINLYEILGDQVPSEVINNLQSQIDQV 92
           QL  K ++IQ++++G+E LA  +S  G ++  L     + V  E   NL+  + +V
Sbjct: 502 QLDEKTSIIQELRKGVEDLAFKESFIGKEKSGLDRKYSELV--EANENLRENLSEV 555


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 50   QEGIELAAYQSIPGNQRINLYEILGDQVP 78
            Q  + L  YQ IP  QR+ L E L +  P
Sbjct: 2212 QRNLRLRTYQVIPMTQRVGLIEWLKNTKP 2240


>SB_18531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 41  PKDAVIQKVQEGIELAAYQSIPGNQRINLYEIL 73
           P DA  QKV E  +  AYQ I      N  ++L
Sbjct: 97  PHDAAKQKVSEHAQSNAYQEIEKRPAANYQDLL 129


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 26  FSNEAIKQAQNTQLIPKDAVIQKVQEGIELAA---YQSIPGNQRINLYEILGDQVPSEVI 82
           + + A+KQA    L P    + +V+E   LA    Y  +P + +  +++   D V   V+
Sbjct: 751 YVDSAVKQALQIHLTPSKERLAEVEEAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCVV 810


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 53   IELAAYQSIPGNQRINLYEILGDQVPSEVINNLQSQIDQ 91
            +E+   Q + G   I L  + GD+VP+  +N     +D+
Sbjct: 3146 MEMIERQDVIGELPIKLIHVKGDKVPAAPLNIQVQSVDK 3184


>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1830

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 46 IQKVQEGIELAAYQSIPGNQRINLYEILGDQVPSEVINNLQSQID 90
          + K+ EG+ L     +PG+ R+ L   +     + V+NN+   +D
Sbjct: 45 VPKLSEGVTL-----VPGSLRVGLDLFVSGHANNTVVNNVDRNLD 84


>SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)
          Length = 698

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 42  KDAVIQKVQEGIELAAYQSIPGNQRINLYEI-----LGDQVPSEVINNLQSQIDQ 91
           K+ + +     + L AY+S P  +R N YEI     L +++PS   N    +IDQ
Sbjct: 431 KNILRKNTNPHLGLLAYRSAPPGKRPNPYEILMGRKLRNKLPSVFENLRPRKIDQ 485


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.133    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,287
Number of Sequences: 59808
Number of extensions: 73437
Number of successful extensions: 250
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 14
length of query: 95
length of database: 16,821,457
effective HSP length: 70
effective length of query: 25
effective length of database: 12,634,897
effective search space: 315872425
effective search space used: 315872425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)