GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002848-TA|BGIBMGA002848-PA|undefined
         (95 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1953|AAF53010.1|   98|Drosophila melanogaster CG17127-P...   132   8e-32
AE014134-2992|AAF53719.2|  178|Drosophila melanogaster CG10603-P...    27   4.6  

>AE014134-1953|AAF53010.1|   98|Drosophila melanogaster CG17127-PA
          protein.
          Length = 98

 Score =  132 bits (318), Expect = 8e-32
 Identities = 63/78 (80%), Positives = 70/78 (89%), Gaps = 1/78 (1%)

Query: 19 PQ-REGAVFSNEAIKQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQV 77
          PQ REGA ++NEAI+QAQ T LIPKDA IQ VQEGIEL AY+ IPGNQRINL+EILGDQV
Sbjct: 21 PQNREGAAYTNEAIRQAQQTLLIPKDAQIQNVQEGIELGAYEQIPGNQRINLFEILGDQV 80

Query: 78 PSEVINNLQSQIDQVGRN 95
          PSEVINNLQSQ+DQ+GRN
Sbjct: 81 PSEVINNLQSQVDQIGRN 98


>AE014134-2992|AAF53719.2|  178|Drosophila melanogaster CG10603-PA
           protein.
          Length = 178

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 9/41 (21%)

Query: 56  AAYQSIPGN-------QRINLYEILGDQVPSEVINNLQSQI 89
           A Y S+ GN       QR++L+    DQVP E++ N+ +QI
Sbjct: 106 AVYNSMRGNLQRRHTMQRLHLFA--DDQVPEEILQNVTNQI 144


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.315    0.133    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,632,210
Number of Sequences: 52641
Number of extensions: 112931
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 2
length of query: 95
length of database: 24,830,863
effective HSP length: 72
effective length of query: 23
effective length of database: 21,040,711
effective search space: 483936353
effective search space used: 483936353
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)