GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002848-TA|BGIBMGA002848-PA|undefined
         (95 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z92788-9|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z92788-6|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z92788-4|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z92788-3|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z92788-2|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr...    27   1.5  
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote...    27   1.5  
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote...    27   1.5  
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote...    27   1.5  
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    27   2.0  
U39647-1|AAA80375.2|  351|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z93393-17|CAB07693.2|  751|Caenorhabditis elegans Hypothetical p...    25   8.1  
U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
            ZK1151.1h protein.
          Length = 3424

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 3053 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 3083


>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
            ZK1151.1a protein.
          Length = 3436

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 3065 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 3095


>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
            ZK1151.1f protein.
          Length = 3322

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 2951 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 2981


>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
            ZK1151.1e protein.
          Length = 3323

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 2952 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 2982


>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
            ZK1151.1d protein.
          Length = 3405

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 3034 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 3064


>Z92788-9|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
            ZK1151.1h protein.
          Length = 3424

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 3053 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 3083


>Z92788-6|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
            ZK1151.1a protein.
          Length = 3436

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 3065 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 3095


>Z92788-4|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
            ZK1151.1f protein.
          Length = 3322

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 2951 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 2981


>Z92788-3|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
            ZK1151.1e protein.
          Length = 3323

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 2952 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 2982


>Z92788-2|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
            ZK1151.1d protein.
          Length = 3405

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 3034 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 3064


>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
            protein.
          Length = 3436

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 3065 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 3095


>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
            protein.
          Length = 3436

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 3065 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 3095


>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
            protein.
          Length = 3436

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 44   AVIQKVQEG-IELAAYQSIPGNQRINLYEIL 73
            ++ Q +QEG I+  + Q I GN   NL+ +L
Sbjct: 3065 SIAQAIQEGFIDTGSVQGIEGNDESNLFNVL 3095


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 36  NTQLIPKDAVIQKVQEGIELAAYQSIPGNQRINLYEI 72
           + QL  KD VI+K+   IEL    ++  +QRI  YE+
Sbjct: 256 SAQLNEKDLVIEKITRKIELLQENNVKKDQRI--YEL 290


>U39647-1|AAA80375.2|  351|Caenorhabditis elegans Hypothetical
          protein C44E12.1 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 43 DAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQVPSEVINNLQSQIDQV 92
          D V + ++E       QSIP + R N+Y    +  P  V   L + +D V
Sbjct: 31 DVVAKDLEENGWTVYKQSIPNSDRYNIYATFRNSDPKHVKVLLNTHLDTV 80


>Z93393-17|CAB07693.2|  751|Caenorhabditis elegans Hypothetical
           protein Y48E1B.7 protein.
          Length = 751

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 27  SNEAIKQAQNTQLIPKDAVIQKVQEGIELAA 57
           SNE IKQ     LIP ++ + K+++     A
Sbjct: 572 SNEVIKQIDYRDLIPNESTLLKLKKAYNYLA 602


>U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical
           protein F54D8.6 protein.
          Length = 783

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 49  VQEGIELAAYQSIPGNQRINLYEILGDQVPSEVINNLQSQ 88
           V    E A  + +PG Q   L E   ++VP+E I     Q
Sbjct: 115 VAVNFEEAPVEEVPGEQEAVLVEEEEEEVPAEAIEKSHEQ 154


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.133    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,292
Number of Sequences: 27539
Number of extensions: 57629
Number of successful extensions: 168
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 17
length of query: 95
length of database: 12,573,161
effective HSP length: 69
effective length of query: 26
effective length of database: 10,672,970
effective search space: 277497220
effective search space used: 277497220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)