GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002846-TA|BGIBMGA002846-PA|undefined
         (353 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   4.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   4.4  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   7.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.7  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 253 VMPDFSRAPLCSDAAVDSWLHYFELDAP 280
           V+P  +R PL S  ++ S L    L+AP
Sbjct: 10  VIPTMARTPLKSSFSISSILPETALEAP 37


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 95  EIGGPPYLVPQVKRDKIYDLAKLLEHLNRDP 125
           E+G  P L P VKR  +  LA  L    ++P
Sbjct: 120 EVGRFPGLDPVVKRRLLQHLASCLNQGQKEP 150


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 322 TPEDVHYEG 330
           TPE +HYEG
Sbjct: 47  TPESLHYEG 55


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 68  SVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKI 111
           SVA        PY L+SP    +A  V++  PP+   Q  R+ +
Sbjct: 707 SVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPV 750


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 68  SVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKI 111
           SVA        PY L+SP    +A  V++  PP+   Q  R+ +
Sbjct: 599 SVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPV 642


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,618
Number of Sequences: 317
Number of extensions: 3451
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 353
length of database: 114,650
effective HSP length: 57
effective length of query: 296
effective length of database: 96,581
effective search space: 28587976
effective search space used: 28587976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)