GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002846-TA|BGIBMGA002846-PA|undefined
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    32   0.14 
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    30   0.43 
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me...    28   2.3  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   5.3  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 14  SVQMATLVTSTARMTSIDYTKVTIKEKE-LYTPPLDEVACVLSNGLTTNFKFVEVSVADS 72
           +V + T V S A  +S   T V+I   E  YT    ++A   +   T      E +V+ S
Sbjct: 199 TVILTTSVNSPAVSSSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFS 258

Query: 73  PDLTEPPYYLKSPGLTGDAKLVE 95
            D+   P  L SP  +  + LVE
Sbjct: 259 TDIPATPSTLSSPASSSSSYLVE 281


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 138 YLGVNCEGIVNLSVRNGTVDQGTRIVSVHPVGAP 171
           Y G + +G+++L VRN  + +G++++ +H  GAP
Sbjct: 294 YEGKSMQGLIHL-VRNNEIAEGSKVLYIHLGGAP 326


>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
           RNA-mediated gene silencing |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 118 LEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGTRI 162
           L H+N DPA  +GAGA    Y+G + +   +LS    T+ QGT++
Sbjct: 220 LIHVNEDPACGSGAGA-VGVYIGSSQKTPTSLSF---TISQGTKL 260


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 208 VVAKNRTGKSNFITSIRETLKTHY 231
           +V +N +GKSNF  +IR  L   Y
Sbjct: 30  IVGRNGSGKSNFFAAIRFVLSDAY 53


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,489,538
Number of Sequences: 5004
Number of extensions: 59904
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 4
length of query: 353
length of database: 2,362,478
effective HSP length: 73
effective length of query: 280
effective length of database: 1,997,186
effective search space: 559212080
effective search space used: 559212080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)