GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002846-TA|BGIBMGA002846-PA|undefined
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0129 - 872127-872681,872762-873070,873180-873347                 29   4.3  
12_01_0462 - 3629190-3629425,3629765-3630122,3630573-3630796,363...    29   5.6  
04_04_1136 - 31142742-31142806,31143245-31143325,31143432-311435...    29   5.6  
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607...    29   5.6  
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171...    29   5.6  
01_03_0194 + 13645418-13645790,13645879-13647653                       29   7.4  
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680           28   9.8  

>05_01_0129 - 872127-872681,872762-873070,873180-873347
          Length = 343

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)

Query: 256 DFSRAPLCSDAAVDSWL--HYFELD 278
           D S+A LC D  VDSWL   ++ELD
Sbjct: 262 DESQAVLCPDVEVDSWLGIDFYELD 286


>12_01_0462 -
          3629190-3629425,3629765-3630122,3630573-3630796,
          3631375-3631552
          Length = 331

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 38 KEKELYTPPLDEVACVLSNGLTTNFKFVEVSVADSPDLTEPPYYLK-SPGLTGDAKLVEI 96
          +E+E  TP  + + C   N  T   KF + S   + D   PPYYL  S       K++EI
Sbjct: 33 EEEEDCTPLPNGLICSRQNWETMYGKFADASPMRNTDRPVPPYYLPISMMQFFSVKVIEI 92

Query: 97 GG 98
           G
Sbjct: 93 MG 94


>04_04_1136 -
           31142742-31142806,31143245-31143325,31143432-31143588,
           31143695-31143809,31144016-31144083,31144171-31144314,
           31144393-31144470,31144555-31144637,31144729-31144768,
           31144993-31145067,31145202-31145314,31145839-31145878,
           31145977-31146128,31146351-31146405,31146717-31146776,
           31147005-31147268,31148379-31148436,31148606-31148637
          Length = 559

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 151 VRNGTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVI 206
           +R     QG  + +V PV  P+ S   ++++LP D+ R    G   ++EGK   V+
Sbjct: 149 IRRSLGSQGFTLPTVEPV--PESSVSKVEERLPEDKERWWKKGLKAISEGKLAVVL 202


>02_04_0224 -
           21059328-21059888,21060388-21060462,21060715-21060798,
           21060866-21061183,21061511-21061722,21061766-21062030
          Length = 504

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 75  LTEPPYYLKSPGL-TGDAKLVEIGGPPYLVPQVKRD 109
           + +PPY +++ G  +G  KL++    PY VP  KRD
Sbjct: 324 ICDPPYGVRAGGRKSGGRKLIKGTVAPYTVPDEKRD 359


>02_01_0258 -
           1709672-1709752,1710277-1710460,1710627-1710841,
           1711321-1711390,1711525-1711607,1711720-1711884,
           1712068-1712172,1713021-1713140,1713620-1713718,
           1713790-1713885,1714367-1714480,1715265-1715372,
           1716200-1716264,1716430-1716609,1716747-1717397,
           1717497-1717565,1717639-1717858
          Length = 874

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 19  TLVTSTARMTSIDYTKVTIKEKELYTPPLDEVACVLSNGLTTNFKFVE 66
           +LV++ AR+ + D  K  ++ KE+    L+E+   L   L +N K ++
Sbjct: 593 SLVSAYARLGNFDMAKQVLENKEIPPKYLNEIKSALIGALASNGKVLD 640


>01_03_0194 + 13645418-13645790,13645879-13647653
          Length = 715

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 101 YLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGT 160
           Y+V  V RDK Y+L   LE ++ + AF     A   P +G+N   I+  +V NG  +   
Sbjct: 71  YVVSYVGRDKYYNLFHGLECVD-NRAFCLLLWAALLPMVGMNTSSILT-AVHNGNEELPD 128

Query: 161 RIVS 164
            I+S
Sbjct: 129 IIIS 132


>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
          Length = 612

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 186 ETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGA 241
           E RT L G  +  E +PG+V+ V+  + +GKS  ++ +   L   +   V+  G A
Sbjct: 54  EERTILKG--ITGEARPGEVLAVLGPSGSGKSTLLSILGGRLAGRHAGTVLAGGRA 107


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,123,888
Number of Sequences: 37544
Number of extensions: 433634
Number of successful extensions: 880
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 7
length of query: 353
length of database: 14,793,348
effective HSP length: 83
effective length of query: 270
effective length of database: 11,677,196
effective search space: 3152842920
effective search space used: 3152842920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)