GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002846-TA|BGIBMGA002846-PA|undefined
         (353 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)                    126   4e-29
SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)                     31   1.9  
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 29   7.5  
SB_46060| Best HMM Match : Astacin (HMM E-Value=1.8e-17)               28   10.0 

>SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)
          Length = 522

 Score =  126 bits (303), Expect = 4e-29
 Identities = 62/155 (40%), Positives = 87/155 (56%), Gaps = 4/155 (2%)

Query: 190 ALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRG 249
           +LL N L+TEGKPGKV+KV A  RTG  NF+T +R  L ++YG++ VG+GG F++  G+ 
Sbjct: 369 SLLANCLITEGKPGKVLKVEASKRTGDENFVTCMRLALGSYYGNRAVGIGGTFMIAKGKA 428

Query: 250 YFHVMPDFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXXRVQXXXXXXXXXX 309
            FH+MP+FS+ PL S   V++WL ++++ AP                RV+          
Sbjct: 429 NFHIMPEFSKTPLNSPEEVNNWLKFYDMSAPLVCLGVLESYDPGLDLRVE----HFHGYN 484

Query: 310 XXXXXXXXXXDTTPEDVHYEGYFTVASSLIRVDPP 344
                     DTTP +V Y GYFT A  L R+D P
Sbjct: 485 NHGEGGHYHYDTTPNEVEYVGYFTPAERLYRMDRP 519



 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 51  ACVLSNGLTTNFKFVEVSVADSPDLTEPPYYLKSPGLT-----GDAKLVEIGGPPYLVPQ 105
           A  +S+  T+N K +     +  DL  PP    + GL      G  ++V++GGP YL+P 
Sbjct: 256 AASMSSRSTSNEKELSKFPVEDVDLYVPPLDELAKGLILLGFGGKPRIVDVGGPAYLLPL 315

Query: 106 VKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCE 144
            + +KIYD+  +    +    ++ GAGAG    +GVNCE
Sbjct: 316 PQLNKIYDMNDVAAKADLPGGYVIGAGAGSHTSVGVNCE 354


>SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)
          Length = 576

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 156 VDQGTRIVSVHPVGAPKGSSGYLQQQLPN----DETRTALLGNYLLTEGK 201
           ++  TR  +V PVG   G  G L  ++ N     E  T ++GN LL EG+
Sbjct: 515 IELKTRTGTVRPVGMRAGVEGALHIRMANIGHHSEMNTDMIGNVLLKEGQ 564


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)

Query: 102 LVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPW 136
           +VP VK++ +   A+++++LNR P F     A PW
Sbjct: 359 VVPHVKKEDLEYFAEVIDNLNRTPKF----RASPW 389


>SB_46060| Best HMM Match : Astacin (HMM E-Value=1.8e-17)
          Length = 339

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 154 GTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEG 200
           GT  QGT   S H     KGS  Y++   P  +   A++G Y   +G
Sbjct: 291 GTPSQGTGPSSGH---GGKGSYMYIEASSPRKQNDNAMMGGYFTFDG 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,018,187
Number of Sequences: 59808
Number of extensions: 443395
Number of successful extensions: 1025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 7
length of query: 353
length of database: 16,821,457
effective HSP length: 83
effective length of query: 270
effective length of database: 11,857,393
effective search space: 3201496110
effective search space used: 3201496110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)