GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002846-TA|BGIBMGA002846-PA|undefined
         (353 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.99 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   7.0  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 138 YLGVNCEGIVNLSVRNGT 155
           YLG+ C+G+ ++  RN T
Sbjct: 9   YLGITCQGVTDIHSRNLT 26


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 139 LGVNCEGIVNLSVRNGT 155
           LG+ C+GI +++VR  +
Sbjct: 11  LGIACQGITSVTVRENS 27


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,936
Number of Sequences: 429
Number of extensions: 3858
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 353
length of database: 140,377
effective HSP length: 58
effective length of query: 295
effective length of database: 115,495
effective search space: 34071025
effective search space used: 34071025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)