GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002845-TA|BGIBMGA002845-PA|IPR009543|Vacuolar protein
sorting-associated protein
         (1354 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        25   4.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   6.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   8.1  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 691 GQFAEHELARVVAPLLFSFAEPDARPTLCARLGRGLPGNPEWCSPFGLGPGVSVKR 746
           G+  E +   + A L FS   P  +   CA L +    + E  S     PG+ +KR
Sbjct: 163 GKGGECDEITIQAILEFSVTNPTIKEDFCAVLWKDKSTDNEGVSDCDSEPGIPLKR 218


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 716 PTLCARLGRGLPGNPEWCSPFGLG 739
           P+L + LG GL G P     FGLG
Sbjct: 81  PSLSSGLGGGLSGMPMPALGFGLG 104


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 906 HASVELQRSPSDKYNAYFFRHLVVALKP 933
           HA V   +SP++KY+     H  V L P
Sbjct: 99  HAVVHPGQSPAEKYDQQHLYHPQVLLSP 126


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,877
Number of Sequences: 317
Number of extensions: 8454
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 3
length of query: 1354
length of database: 114,650
effective HSP length: 65
effective length of query: 1289
effective length of database: 94,045
effective search space: 121224005
effective search space used: 121224005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)