GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002845-TA|BGIBMGA002845-PA|IPR009543|Vacuolar protein
sorting-associated protein
         (1354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    64   2e-10
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    44   1e-04
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    29   4.4  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 21/210 (10%)

Query: 1059 DAAVELEPFERVHVFETASYLGRQMLAHFKDELKWQAAKILGSVDFLGNPLGFVADVSEG 1118
            DA V+L      +   T S +  ++ +H+K ++ +Q  KI G  DFLGNP+G   +V+ G
Sbjct: 2652 DAPVQLNSILLENARGTLSEMANRVASHYKQQVGYQIYKIAGRADFLGNPVGLFNNVASG 2711

Query: 1119 VTGLLLEGNVGALLKN------------------VTHGISNSAAKVSESLGDGLERVVWD 1160
            V  +  E   G LL++                    +G+S+S +K++ ++  GL  +  D
Sbjct: 2712 VFDMFYEPYQGFLLQDSQSFGDSFARGTSSFMRKTIYGVSDSVSKITGTISKGLSTMTMD 2771

Query: 1161 EAHEETRRRIRSXXXXXXXXXXXXXXXXXXXXXMTS---LVKHSYEGATQEXXXXXXXXX 1217
              ++ +RRR RS                     M+S    +K  +               
Sbjct: 2772 PKYQNSRRRFRSRNRPKEAVYGVTAGANSFYDSMSSGFKGLKKPFTDPKNNSAGKFLKGF 2831

Query: 1218 XXXXXXXXXXPVIGVLDLAAETASALRDTS 1247
                      P IG+LD+ +  +  +R+++
Sbjct: 2832 GKGMLGLATKPAIGLLDMTSNVSEGIRNST 2861



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 136  YNRTLSSWEPMVEPWRF 152
            +N   S WEP++EPW F
Sbjct: 1677 FNFAKSHWEPVIEPWTF 1693



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 876  MQWDNQLLGTPSPVLLY--CLPDRSGANAPALHASVELQRSPSDKYNAYFFRHLVVALKP 933
            +Q DNQ+L +  P+ L+   +      + P L   +         +N  + ++  + L+ 
Sbjct: 2491 LQIDNQMLDSVYPIALFPTMITQEVKQDDPQL-LQLRFSVLKDSSFNILYIKYASLLLQE 2549

Query: 934  LAVRLEERLILVL 946
            L++ +E+RL+L L
Sbjct: 2550 LSLEVEDRLVLTL 2562


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 1086 HFKDELKWQAAKILGSVDFLGNPLGFVADVSEGVTGLLLEGNVGALLKNVTHGISNSAAK 1145
            H+  EL  Q  KI+GS DFLGNP+G    ++ G   +  E   G +L   ++ +    AK
Sbjct: 2742 HYSQELLSQVHKIVGSADFLGNPVGLFTTITSGFADIFYEPFHGFILNEGSYELGIGFAK 2801

Query: 1146 VSES 1149
             + S
Sbjct: 2802 GTAS 2805



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 134  DYYNRTLSSWEPMVEPWRFXXXXXXXXXXXXXXXXAQVHVTSAETLNLNVTSALVELL 191
            ++YN + S WEP +EPW+                   VHV S E L+L +T  L+E L
Sbjct: 1734 NFYNFSNSHWEPFLEPWKVGVHISRNPNTSKTA----VHVFSREKLDLVITPQLIETL 1787



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 875  DMQW---DNQLLGTPSPVLLY----CLPDRSGANA--PALHASVELQRSPSDKYNAYFFR 925
            D++W   DNQL G   P++LY       D    N+  P  H+ V + +  +D Y   + +
Sbjct: 2549 DVRWIQIDNQLYGGIYPIILYPSILSQEDTMNDNSLLPTFHSMVAVVK--NDTYGVTYVK 2606

Query: 926  HLVVALKPLAVRLEERLILVLWSWWREEDEDSAQEQVDEADYETRRMLHSLTALSATRYY 985
            +  + L+ L + ++E        + ++    S +      D     +  +L   +  + Y
Sbjct: 2607 YATILLQELTIEIDEDFAFAALEYIKDSVPRSKRNTGKMFDDSLELVPENLG--NDLKVY 2664

Query: 986  FGLLKIIPSQGYL 998
            F +L + P++ +L
Sbjct: 2665 FEVLNLQPTEMHL 2677



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 768  VRAGRGRYRRTNIVTLAPRYQLHNNTTRTLQFAQ 801
            V  G   Y +TNIVT+  R+ + N T  +L  A+
Sbjct: 2244 VETGPDGYSKTNIVTITSRFIVRNKTRWSLVIAE 2277


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)

Query: 678 LVYRAEGSAADAAGQFAEHELARVVAPLLFSFAEPDARPTLCARLGRGLP 727
           L  +  GS+   AGQ A   +A + A  L +   PD   TL A +G G P
Sbjct: 94  LALQTLGSSEHQAGQSAAQLVAAIAAYELATNQWPDLMVTLVANVGEGQP 143


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,664,179
Number of Sequences: 5004
Number of extensions: 155774
Number of successful extensions: 305
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 14
length of query: 1354
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1273
effective length of database: 1,957,154
effective search space: 2491457042
effective search space used: 2491457042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)