Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002845-TA|BGIBMGA002845-PA|IPR009543|Vacuolar protein
sorting-associated protein
(1354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0090 - 5564326-5567280 38 0.055
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 35 0.39
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 32 3.6
10_01_0088 + 1087807-1088282,1088752-1088974 31 6.3
06_01_0908 - 7006160-7007488 31 6.3
>03_02_0090 - 5564326-5567280
Length = 984
Score = 37.9 bits (84), Expect = 0.055
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 1095 AAKILGSVDFLGNPLGFVADVSEGVTGLLLEGNVG--ALLKNVTHGISNSAAKVSESLGD 1152
AA +G+ D+L LG++AD + GV G+ G VG LL+ + + +A + S
Sbjct: 165 AAAAVGTEDYLKEALGYIADDAVGVIGVCGMGGVGKTTLLRAINNSFLPTARQPPAS-SK 223
Query: 1153 GLERVVWDEAHEETR 1167
+ VVW A +E R
Sbjct: 224 VFDHVVWAVASKECR 238
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 35.1 bits (77), Expect = 0.39
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 1083 MLAHFKDELKWQAAKILGSVDFLGNPLGFVADVSEGVTGLLLEGNVGALLKNVTHGISNS 1142
++ H+ +L + K+ GS +GNP+GF +V G+ + G L V + N
Sbjct: 2950 LVRHYSRQLLHEVYKVFGSAGVIGNPMGFARNVGFGLKDFVSASRRGILQSPVE--LLNG 3007
Query: 1143 AAKVSESL 1150
A+ S++L
Sbjct: 3008 IAQGSKTL 3015
Score = 31.1 bits (67), Expect = 6.3
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 134 DYYNRTLSSWEPMVEPWRFXXXXXX--XXXXXXXXXXAQVHVTSAETLNLNVTSALVELL 191
+Y N WEP +EP +F +V + S+ LNLN++ L+E +
Sbjct: 1737 NYNNIDKVMWEPFIEPSKFQLNVIRKCANHALDISPSTEVWLNSSNQLNLNISEPLIEAI 1796
Query: 192 M 192
+
Sbjct: 1797 L 1797
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 31.9 bits (69), Expect = 3.6
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 136 YNRTLSSWEPMVEPWRFXXXXXXXXXXXXXXXXAQVHVTSAETLNLNVTSALVELLMLVR 195
YN +SWEP +EP Q+ + S LN+N++ + +L
Sbjct: 2477 YNDKYNSWEPFIEP--TDGFLRYQYDMNTPGSPGQLRIASTRDLNMNISVSNTNMLSQAY 2534
Query: 196 ANWTADYYAPHAQVLRSVSASR---IECQNERFLYVVCRTQSG 235
A+W + + S S ++ R YV+ + + G
Sbjct: 2535 ASWNNISLGNELYRMETSSTSERSILDVHERRSYYVIPQNKLG 2577
>10_01_0088 + 1087807-1088282,1088752-1088974
Length = 232
Score = 31.1 bits (67), Expect = 6.3
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 1284 SCAVVEAGGAQLVELGVRGGEAGVRRPRVQCDSAALARWLRTHALYAA 1331
SCAVVEAGG Q GG G RR + +AA R ++AA
Sbjct: 21 SCAVVEAGGVQGARATPAGGHGGDRRRKGAGLAAAGGDGRRRGGVWAA 68
>06_01_0908 - 7006160-7007488
Length = 442
Score = 31.1 bits (67), Expect = 6.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 968 ETRRMLHSLTALSATRYYFGLLKIIPSQ-GYLYGHPGRHH 1006
E R+ +T TR FG++ + P+ GHPG HH
Sbjct: 362 EVRKAREKVTTTMRTRRRFGVVDVTPAMMARADGHPGEHH 401
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,313,234
Number of Sequences: 37544
Number of extensions: 1254421
Number of successful extensions: 2917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2907
Number of HSP's gapped (non-prelim): 10
length of query: 1354
length of database: 14,793,348
effective HSP length: 91
effective length of query: 1263
effective length of database: 11,376,844
effective search space: 14368953972
effective search space used: 14368953972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)
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