Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002845-TA|BGIBMGA002845-PA|IPR009543|Vacuolar protein
sorting-associated protein
(1354 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 79 2e-14
U23510-14|AAO38611.1| 199|Caenorhabditis elegans Hypothetical p... 62 2e-09
U23510-13|AAK71392.2| 425|Caenorhabditis elegans Hypothetical p... 62 2e-09
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 50 9e-06
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 50 9e-06
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 79.4 bits (187), Expect = 2e-14
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 637 KLRDTRSRRLYLNARVTVKKTDGMKVSVSAAYWLVNRTGLPLVYRAEGSAADAAGQFAEH 696
K+ D++ L + V + + VS+ YW+VN++G+PL+ + E +AAGQ EH
Sbjct: 1096 KMADSKGHLLDMYCHVRLGVAQAISVSLWVPYWIVNKSGIPLIIQQEAVKWEAAGQMEEH 1155
Query: 697 ELARVVAPLLFSFAEPDARPTLCARLGRGLPGNPEWCS----PFGLGPGVSVKRLXXXXX 752
E A+ PL+FSFA+ + R+G + S F L PGV +L
Sbjct: 1156 EKAKDRHPLMFSFADENCPKACRVRVGNAYIRENGYRSILSEKFTLTPGVQALKL---RV 1212
Query: 753 XXXXXXXXXXXXXXSVRAGRGRYRRTNIVTLAPRYQLHNNTTRTL 797
VR G GRY+ T +V L R+ L N +T L
Sbjct: 1213 EHKTKPTFYYNLGVEVRPGTGRYKDTQVVLLTSRFLLQNQSTVAL 1257
Score = 67.7 bits (158), Expect = 5e-11
Identities = 32/90 (35%), Positives = 53/90 (58%)
Query: 1079 LGRQMLAHFKDELKWQAAKILGSVDFLGNPLGFVADVSEGVTGLLLEGNVGALLKNVTHG 1138
L +Q + EL+ Q I+ ++D GNPLG V D+ + GL +EG+V + + +G
Sbjct: 1825 LKQQFNKFYLAELQKQTLSIIVTLDAFGNPLGLVTDLKDSFQGLFIEGDVQRFVAGLGYG 1884
Query: 1139 ISNSAAKVSESLGDGLERVVWDEAHEETRR 1168
+SNS +KV+ S+ G+ + +D+ HE RR
Sbjct: 1885 LSNSVSKVASSMASGVGALTFDQDHELKRR 1914
Score = 47.2 bits (107), Expect = 8e-05
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 249 RRRSPFVPYALRNHTGHKLWFTTLLTTVDEMRPTGRGDGCGPDDTWMLVRAQHTEPFSFG 308
R S +PY ++N TG ++ FTT + V T R + WM V + F F
Sbjct: 780 RSSSDHLPYVMKNTTGCEVHFTTAVEDV----LTARSEQRKSTTRWMTVGRGQEKNFEFP 835
Query: 309 GXXXXXXXXXXXXXWTVLLRLDGWDPPDPVCVDRVGLYFR 348
+++R+ GWD PV VD G YFR
Sbjct: 836 ARLLLYSHLEREPPRQLIVRVSGWDEISPVNVDSCGTYFR 875
Score = 41.9 bits (94), Expect = 0.003
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 410 ARIVFEVSLEGSARKLVTVRSALQLVNKLPHPVEVRMDHAPSTAQWVGGGVRSARVSPGD 469
AR++ V++E +K+VT++S++ + N LPHP+ V+ T GG V S V P
Sbjct: 887 ARLLISVTMENDGKKVVTLKSSIDITNHLPHPIAVQ------TEGTKGGEVMS--VEPNG 938
Query: 470 SWAAPLE 476
+ PLE
Sbjct: 939 VVSVPLE 945
Score = 33.9 bits (74), Expect = 0.80
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 134 DYYNRTLSSWEPMVEPWRFXXXXXXXXXXXXXXXXAQVHVTSAETLNLNVTSALVE 189
DY+N+ + WEP++E W+ + TLN+NVT L++
Sbjct: 701 DYFNQRIFGWEPVIEEWKILRFLHNKKDLKQTIEWV---AETKSTLNINVTEQLIQ 753
>U23510-14|AAO38611.1| 199|Caenorhabditis elegans Hypothetical
protein R12C12.8b protein.
Length = 199
Score = 62.5 bits (145), Expect = 2e-09
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 637 KLRDTRSRRLYLNARVTVKKTDGMKVSVSAAYWLVNRTGLPLVYRAEGSAADAAGQFAEH 696
K+ D++ L + V + + VS+ YW+VN++G+PL+ + E +AAGQ EH
Sbjct: 49 KMADSKGHLLDMYCHVRLGVAQAISVSLWVPYWIVNKSGIPLIIQQEAVKWEAAGQMEEH 108
Query: 697 ELARVVAPLLFSFAEPDARPTLC 719
E A+ PL+FSFA+ + P C
Sbjct: 109 EKAKDRHPLMFSFADENC-PKAC 130
>U23510-13|AAK71392.2| 425|Caenorhabditis elegans Hypothetical
protein R12C12.8a protein.
Length = 425
Score = 62.5 bits (145), Expect = 2e-09
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 637 KLRDTRSRRLYLNARVTVKKTDGMKVSVSAAYWLVNRTGLPLVYRAEGSAADAAGQFAEH 696
K+ D++ L + V + + VS+ YW+VN++G+PL+ + E +AAGQ EH
Sbjct: 275 KMADSKGHLLDMYCHVRLGVAQAISVSLWVPYWIVNKSGIPLIIQQEAVKWEAAGQMEEH 334
Query: 697 ELARVVAPLLFSFAEPDARPTLC 719
E A+ PL+FSFA+ + P C
Sbjct: 335 EKAKDRHPLMFSFADENC-PKAC 356
Score = 30.7 bits (66), Expect = 7.5
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 134 DYYNRTLSSWEPMVEPWR 151
DY+N+ + WEP++E W+
Sbjct: 217 DYFNQRIFGWEPVIEEWK 234
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
T08G11.1b protein.
Length = 3185
Score = 50.4 bits (115), Expect = 9e-06
Identities = 43/209 (20%), Positives = 85/209 (40%), Gaps = 20/209 (9%)
Query: 1056 KFEDAAVELEPFERVHVFETASYLGRQMLAHFKDELKWQAAKILGSVDFLGNPLGFVADV 1115
+ +D +L FER VF + L ++++H+ + Q ++ +D +GNP G V D+
Sbjct: 2829 ELQDVVFKLAYFERKCVFYSPEQLNSEIISHYAKQFIKQVYVLVLGLDIIGNPFGLVRDL 2888
Query: 1116 SEGVTGLL-------LEG----------NVGALLKNVTHGISNSAAKVSESLGDGLERVV 1158
S GV L ++G V ++ + G + + +++ ++G G+ +
Sbjct: 2889 SAGVEDLFYQPFQGAIQGPEEFAAGVALGVQSMFGHAVGGAAGAVGRITGTVGKGVAALT 2948
Query: 1159 WDEAHEETRR---RIRSXXXXXXXXXXXXXXXXXXXXXMTSLVKHSYEGATQEXXXXXXX 1215
+D+ + + R+ + +T +V EGA QE
Sbjct: 2949 FDDDYMKKRQEDLNRKPQSFGEGMARGLKGLGMGVVGGITGVVTKPIEGAKQEGGFGFVK 3008
Query: 1216 XXXXXXXXXXXXPVIGVLDLAAETASALR 1244
PV GV+D A+ T +++R
Sbjct: 3009 GVGKGLIGVVTRPVSGVVDFASGTMNSVR 3037
Score = 31.1 bits (67), Expect = 5.6
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 135 YYNRTLSSWEPMVEP----------WRFXXXXXXXXXXXXXXXXAQ--VHVTSAETLNLN 182
YYN ++S WEP++EP W+ Q V + + + LN+
Sbjct: 1804 YYNESVSVWEPIIEPVENEKGEFERWKLAMTMKSRNKQDSSDSSPQTEVKIEADKMLNVT 1863
Query: 183 VTSALVELL 191
VT +L+ LL
Sbjct: 1864 VTKSLLSLL 1872
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
T08G11.1a protein.
Length = 3212
Score = 50.4 bits (115), Expect = 9e-06
Identities = 43/209 (20%), Positives = 85/209 (40%), Gaps = 20/209 (9%)
Query: 1056 KFEDAAVELEPFERVHVFETASYLGRQMLAHFKDELKWQAAKILGSVDFLGNPLGFVADV 1115
+ +D +L FER VF + L ++++H+ + Q ++ +D +GNP G V D+
Sbjct: 2856 ELQDVVFKLAYFERKCVFYSPEQLNSEIISHYAKQFIKQVYVLVLGLDIIGNPFGLVRDL 2915
Query: 1116 SEGVTGLL-------LEG----------NVGALLKNVTHGISNSAAKVSESLGDGLERVV 1158
S GV L ++G V ++ + G + + +++ ++G G+ +
Sbjct: 2916 SAGVEDLFYQPFQGAIQGPEEFAAGVALGVQSMFGHAVGGAAGAVGRITGTVGKGVAALT 2975
Query: 1159 WDEAHEETRR---RIRSXXXXXXXXXXXXXXXXXXXXXMTSLVKHSYEGATQEXXXXXXX 1215
+D+ + + R+ + +T +V EGA QE
Sbjct: 2976 FDDDYMKKRQEDLNRKPQSFGEGMARGLKGLGMGVVGGITGVVTKPIEGAKQEGGFGFVK 3035
Query: 1216 XXXXXXXXXXXXPVIGVLDLAAETASALR 1244
PV GV+D A+ T +++R
Sbjct: 3036 GVGKGLIGVVTRPVSGVVDFASGTMNSVR 3064
Score = 31.1 bits (67), Expect = 5.6
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 135 YYNRTLSSWEPMVEP----------WRFXXXXXXXXXXXXXXXXAQ--VHVTSAETLNLN 182
YYN ++S WEP++EP W+ Q V + + + LN+
Sbjct: 1804 YYNESVSVWEPIIEPVENEKGEFERWKLAMTMKSRNKQDSSDSSPQTEVKIEADKMLNVT 1863
Query: 183 VTSALVELL 191
VT +L+ LL
Sbjct: 1864 VTKSLLSLL 1872
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,918,397
Number of Sequences: 27539
Number of extensions: 907286
Number of successful extensions: 1746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1725
Number of HSP's gapped (non-prelim): 19
length of query: 1354
length of database: 12,573,161
effective HSP length: 90
effective length of query: 1264
effective length of database: 10,094,651
effective search space: 12759638864
effective search space used: 12759638864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -