GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002845-TA|BGIBMGA002845-PA|IPR009543|Vacuolar protein
sorting-associated protein
         (1354 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.26 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    29   0.26 

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 29.1 bits (62), Expect = 0.26
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 678 LVYRAEGSAADAAGQFAEHELARVVAPLLFSFAEPDARPTLCARLGRGLPGNP 730
           +V R+EG  A A+   AE +L      LL+SF E   +P     L     GNP
Sbjct: 400 IVRRSEGDTAQAS---AELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGNP 449


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.26
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 678 LVYRAEGSAADAAGQFAEHELARVVAPLLFSFAEPDARPTLCARLGRGLPGNP 730
           +V R+EG  A A+   AE +L      LL+SF E   +P     L     GNP
Sbjct: 400 IVRRSEGDTAQAS---AELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGNP 449


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,562
Number of Sequences: 429
Number of extensions: 10428
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 2
length of query: 1354
length of database: 140,377
effective HSP length: 66
effective length of query: 1288
effective length of database: 112,063
effective search space: 144337144
effective search space used: 144337144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)