GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002844-TA|BGIBMGA002844-PA|IPR000976|Wilm's tumour
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    29   2.4  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    29   3.1  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    27   7.2  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   9.6  

>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 166 PHHTA-LQEKDKAKKQENKCGATPPCSPEGEGDTEDDAQFD--DSPSSDDDNLVCVSVHT 222
           P  TA L E+++ +       +TP  SP+   D +D+ +F+  D+  S D +   V+   
Sbjct: 56  PSLTAELSEEEEGEYSSESGRSTPELSPDDFEDADDEEEFEEIDAGYSSDSSTEDVAPGL 115

Query: 223 TDPEHPDLNLVINID 237
            +  + D NL IN D
Sbjct: 116 YESPY-DENLYINYD 129


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 141 DVGEGERSL-VELSLQQLALHY--RRARPHHTALQEKDKAKKQENKCGATPPCS------ 191
           D  E   SL + LS Q L+     ++  PH   ++E+  A    N    T P S      
Sbjct: 147 DDEEASDSLPLSLSSQSLSSQVTNQKPAPHRLTMRERYAANNLTNGLQFTLPLSSRKTYE 206

Query: 192 PEGEGDTEDDAQFDDSPSSD 211
           PE + D+ DD   DD  ++D
Sbjct: 207 PEADDDSNDDMYSDDDSNAD 226


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 157 LALHYRRARPH-HTALQEKDKAKKQENKCGATPPCSPEGEGDTEDDAQFDDSPSS 210
           + LH++ +R    +  +EK+   +  +    +P  +PE + + E D + D + SS
Sbjct: 47  IRLHFKDSRKFAFSRKKEKELTSEDSDAANQSPSGAPESQTEEESDRKIDGTGSS 101


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 172 QEKDKAKKQENKCGATPPCSPEGEGDTEDDAQFDDSPSSDDDNLVCVSVHTTDPEHP 228
           +E  KAKKQ  K  + P  +P+     E+D   D S   ++ +   + +  T   +P
Sbjct: 40  RELAKAKKQAEKAASAPVAAPKSSSKKEED--LDPSQYFENRSRTIMELRQTKDPNP 94


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,435
Number of Sequences: 5004
Number of extensions: 85287
Number of successful extensions: 200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 4
length of query: 753
length of database: 2,362,478
effective HSP length: 78
effective length of query: 675
effective length of database: 1,972,166
effective search space: 1331212050
effective search space used: 1331212050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)