Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002844-TA|BGIBMGA002844-PA|IPR000976|Wilm's tumour
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1197 + 25199614-25199795,25200241-25200308,25200309-252004... 32 1.5
05_05_0299 - 23930657-23932627 32 1.9
03_03_0006 - 13666961-13667755 32 1.9
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665... 31 4.5
01_07_0047 + 40731508-40731714,40731834-40731893,40731992-407321... 31 4.5
11_06_0182 + 20997071-20997832,20998010-20998150 30 5.9
05_07_0124 - 27852840-27853571,27853726-27853769,27854224-278542... 30 5.9
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 30 5.9
11_06_0284 + 21909758-21913645 30 7.8
01_07_0366 + 43088835-43089099,43089311-43089876 30 7.8
>08_02_1197 +
25199614-25199795,25200241-25200308,25200309-25200400,
25200940-25201019,25201418-25201535,25202371-25202562
Length = 243
Score = 32.3 bits (70), Expect = 1.5
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 123 IPLIVRAEVPALSVRLRADVGEGERSLVELSLQQLALHYRRARPHHTALQEKDKAKKQEN 182
IPL ++ + +L D+ R + E Q L +H + +++++++ ++ Q N
Sbjct: 117 IPLEMQTFAALIGEKLVNDIMTEPRQVAE---QLLIMHEECLQSNYSSVEKLRNSRAQGN 173
Query: 183 KCGATPPCSPEGEGDTEDDAQFDD--SPSSDDDNLVCVSVHTTDPEHPDLNLVINIDSWV 240
+ +G+ D+ DD DD PS D+ D P V + D W
Sbjct: 174 AVSQSRKMVVDGDDDSSDDEDDDDDGEPSMMDNEAGSAEKMAVDEPKPS-KPVPDADGWT 232
Query: 241 AV 242
V
Sbjct: 233 TV 234
>05_05_0299 - 23930657-23932627
Length = 656
Score = 31.9 bits (69), Expect = 1.9
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 140 ADVGEGERSLVELSLQQLALHYRRARPHHTALQEKDKAKKQENKCGATPPCSPEGEGDTE 199
+D G GE L ++ + + Y R R H +E + ++ K G PP E E D +
Sbjct: 22 SDGGGGEEDLSKIQINE---EYAR-RFEHNKRREALQRLEERKKKGLVPPEEEEEEDDDD 77
Query: 200 DDAQFDDSPSS 210
D++ DD ++
Sbjct: 78 DESLSDDDDAA 88
>03_03_0006 - 13666961-13667755
Length = 264
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 184 CGATPPCSPEGEGDTEDDAQFDDSPSSDDDN 214
C PP P+ D +DD DD DDD+
Sbjct: 46 CSILPPSPPDEHDDDDDDDDDDDDDDDDDDD 76
>07_03_1780 -
29465873-29466130,29466236-29466335,29466473-29466559,
29466682-29467000,29467097-29468567
Length = 744
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 132 PALSVRLRADVGEGERSLVELSLQQLALHYRRARPHHTALQEKDKAKKQENKCGATPPCS 191
P L+ RLR G +S L +H HH Q + +++ CG TP
Sbjct: 66 PGLAPRLRYVSPAGTKSYYSLRRLIQTIHL-----HHHPTQSQSQSQSDSCGCGDTPLLL 120
Query: 192 PEGEGDTEDDAQFDDS 207
E + D + Q DD+
Sbjct: 121 EESDDDQYQEQQEDDA 136
>01_07_0047 +
40731508-40731714,40731834-40731893,40731992-40732159,
40732198-40732203,40732898-40732961,40733395-40733690,
40733799-40733903,40734030-40734066,40734309-40734403,
40735226-40735282,40735361-40735438,40735527-40735586
Length = 410
Score = 30.7 bits (66), Expect = 4.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 165 RPHHTALQEKDKAKKQENKCGATPPCSPEGEGDTEDDAQFDDSPSSDD 212
R + + D+ + +EN G+T E + D EDD + D PS DD
Sbjct: 182 REYTQIMARLDELEMEENDAGSTSEEDGEDDEDDEDDEE-DAGPSEDD 228
>11_06_0182 + 20997071-20997832,20998010-20998150
Length = 300
Score = 30.3 bits (65), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 195 EGDTEDDAQFDDSPSSDDDNLVCVSVHTTDPEHPDLNLV 233
EGD +DD FD D ++ VC +T H D+ ++
Sbjct: 226 EGDEDDDHSFDSESEFDSESYVC-DTNTIKNNHRDIGVL 263
>05_07_0124 -
27852840-27853571,27853726-27853769,27854224-27854272,
27854753-27854857,27855257-27855366,27857165-27857823,
27858355-27858572
Length = 638
Score = 30.3 bits (65), Expect = 5.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 128 RAEVPALSVRLRADVGEGERSLVELSLQQLALHYRRARPH 167
RAE+ R DVGEGER + E +L +L RPH
Sbjct: 241 RAELDGAGAREAEDVGEGERRVAEAALGELD-EDEGGRPH 279
>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 30.3 bits (65), Expect = 5.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 141 DVGEGERS-LVELSLQQLALHYRRARPHHTALQEKDKAKKQENKCGATPP 189
D EGE + +V + Q +A+H R RPH AL+ + + ++ G P
Sbjct: 1204 DRREGEEAEMVRAAEQLVAVHARHQRPHRQALEASRQVSEHRSRKGNGQP 1253
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 29.9 bits (64), Expect = 7.8
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 162 RRARPHHTALQ-EKDKAKKQENKCGATPPCSPEGEGDTEDDAQ-FDDSPSSDDDN 214
R+ HH + EK++ +K+E + GE + EDD +DD DDD+
Sbjct: 473 RKEEEHHEKQEKEKEEERKEEGQNEEKEGRKEVGEEEKEDDDDDYDDDDDYDDDD 527
>01_07_0366 + 43088835-43089099,43089311-43089876
Length = 276
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 691 QPMPEHPHSVQAEVHARKRQDS-SAYTILINNMRLMAILDWWEAAGNFILQPPPPSA 746
QP PE S + A+ +D + + N ++ +D W ++ N + PP P++
Sbjct: 200 QPQPEDESSASGSLQAQHHEDQHQLFLHPLWNDDIIVDVDCWSSSTNVVAPPPMPAS 256
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,369,942
Number of Sequences: 37544
Number of extensions: 667428
Number of successful extensions: 2213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2198
Number of HSP's gapped (non-prelim): 16
length of query: 753
length of database: 14,793,348
effective HSP length: 88
effective length of query: 665
effective length of database: 11,489,476
effective search space: 7640501540
effective search space used: 7640501540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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