GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002844-TA|BGIBMGA002844-PA|IPR000976|Wilm's tumour
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (753 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2182|AAF49887.2| 3892|Drosophila melanogaster CG32113-P...    53   1e-06
U19493-1|AAF06817.1|  515|Drosophila melanogaster MADS domain tr...    31   7.7  
AF487677-1|AAM18044.1| 1240|Drosophila melanogaster vanaso protein.    31   7.7  

>AE014296-2182|AAF49887.2| 3892|Drosophila melanogaster CG32113-PA
            protein.
          Length = 3892

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 24/138 (17%)

Query: 521  IERNLDP-THNVA-DMTIQGTLATLVCSVDAAQYGVVRGVLDHNLG----DI-------- 566
            +ERNL    H V  D+++QGT + L   ++  QY ++R  L++N+G    DI        
Sbjct: 1902 LERNLSADAHRVCPDISVQGTFSKLSGIINIQQYKLIRSFLNNNIGEQTDDIYMNYHNNS 1961

Query: 567  ------LXXXXXXXXXXXHQQVWTTLSIRLELLDVTVRL----EPEHGVTSLACINFIKS 616
                  L            + V   +SIR+ L DV++ L         +  LACI+F+KS
Sbjct: 1962 CTSIERLSTINLMPKNEVSKIVSILISIRILLEDVSLLLALNTSQSAAIEPLACIHFLKS 2021

Query: 617  RLLVEIYSDLSQDIDLVS 634
             L ++++SD SQDIDL+S
Sbjct: 2022 TLEIDLFSDGSQDIDLIS 2039


>U19493-1|AAF06817.1|  515|Drosophila melanogaster MADS domain
           transcription factorD-MEF2 protein.
          Length = 515

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 154 LQQLALHYRRARPHHTALQEKDKAKKQENKCGATPPCSPEGEGD 197
           + ++ L Y      H +L  K+  +K ENK G   P SPEGE D
Sbjct: 62  MDRVLLKYTEYNEPHESLTNKNIIEK-ENKNGVMSPESPEGETD 104


>AF487677-1|AAM18044.1| 1240|Drosophila melanogaster vanaso protein.
          Length = 1240

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 581  QVWTTLSIRLELLDVTVRLEPEHGVTSLACINFIKSRLLVEIYSDLSQDID 631
            +VW  LS  L+ L ++ +   +H  +  +  +  KS L +E+ +DLS+D+D
Sbjct: 1188 KVWCMLSELLQQLSLSGKDSEDHYASGDSPEDEAKSHLFMEMLADLSRDLD 1238


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,747,417
Number of Sequences: 52641
Number of extensions: 1080356
Number of successful extensions: 4252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4244
Number of HSP's gapped (non-prelim): 9
length of query: 753
length of database: 24,830,863
effective HSP length: 91
effective length of query: 662
effective length of database: 20,040,532
effective search space: 13266832184
effective search space used: 13266832184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)