GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002844-TA|BGIBMGA002844-PA|IPR000976|Wilm's tumour
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (753 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical pr...    31   2.3  
Z79596-7|CAB01859.1|  872|Caenorhabditis elegans Hypothetical pr...    31   2.3  
AF003151-20|AAK18920.2|  251|Caenorhabditis elegans Hypothetical...    31   4.0  

>Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 162 RRARPHHTALQEKDKAKKQENKCGATPPCSPEGEGDTEDDAQFDDSPSSDDDN 214
           R+ + H+   ++KDK KK +       P   E + D +DD + DD    DDD+
Sbjct: 229 RKQKAHNQREEKKDKNKKYQ-------PVKEEPDLDDDDDDEDDDDDDGDDDD 274


>Z79596-7|CAB01859.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 162 RRARPHHTALQEKDKAKKQENKCGATPPCSPEGEGDTEDDAQFDDSPSSDDDN 214
           R+ + H+   ++KDK KK +       P   E + D +DD + DD    DDD+
Sbjct: 229 RKQKAHNQREEKKDKNKKYQ-------PVKEEPDLDDDDDDEDDDDDDGDDDD 274


>AF003151-20|AAK18920.2|  251|Caenorhabditis elegans Hypothetical
           protein D1007.16 protein.
          Length = 251

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 134 LSVRLRADVGEGERSLVELSLQQLALHYRRARPHHTALQEKDKAKKQENKCGATPPCSPE 193
           ++V+   D+ +G    ++  +++L       R   ++ +EK K +KQ  +   T   S +
Sbjct: 108 INVKKTRDLDQGTELALKRGIERLRTSSNNQRSGPSSPEEKAKIQKQMQR--DTSDSSSD 165

Query: 194 GEGDTEDDAQFDDSPSSDDDN 214
            +G ++ D    DS   +D++
Sbjct: 166 SDGSSDSDKSNGDSSDDEDES 186


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,983
Number of Sequences: 27539
Number of extensions: 501409
Number of successful extensions: 1419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1405
Number of HSP's gapped (non-prelim): 17
length of query: 753
length of database: 12,573,161
effective HSP length: 87
effective length of query: 666
effective length of database: 10,177,268
effective search space: 6778060488
effective search space used: 6778060488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)