GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002843-TA|BGIBMGA002843-PA|undefined
         (1415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...   141   5e-34
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...   111   7e-25
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    30   2.0  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    30   2.0  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    28   8.1  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score =  141 bits (342), Expect = 5e-34
 Identities = 101/348 (29%), Positives = 169/348 (48%), Gaps = 18/348 (5%)

Query: 1   MLEGLVAWVLNNYLGKYVENLNTDQLSIALLSGKVELENLPLKKDALRHLGLPVEVKAGF 60
           MLEGLVA +LN  LG YV+NL+T QL+I +  G V L NL +K +AL  LG+P+E+ +G 
Sbjct: 1   MLEGLVAGLLNKILGSYVDNLDTKQLNIGVWGGHVSLHNLRIKPEALDKLGIPIEITSGL 60

Query: 61  IGKVQLQIPVRQIRSAPWVIAIEKLYLVAAPV---NLDEWDSEAEAHHAHERKVALLDAL 117
           IG   L+IP   +R+    I IE +YL   P    +L   + E       + ++   + L
Sbjct: 61  IGTFTLEIPWSNLRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEIL 120

Query: 118 EAQWRAEHEASDAGYYATSYSSWLSYGTGLLANIVENLQLKIIDVHLRYEDTVT-CGRAF 176
              +R   E S +    +   S++ Y   L+A + +N+Q+ I  +HLR+ED ++   + +
Sbjct: 121 RKNFRETLEESSSNPNISRKQSFIEY---LIAKLTDNIQIYIERIHLRFEDNLSDLEKPY 177

Query: 177 ACGLTAQSLAAESCDASWKKW-FSLLPDPEGRSHKLLELQQLALYWDPISTPSAMLAELG 235
           + GLT  SL   S DAS+ ++  S  P P    HK++ +   ++YW      S       
Sbjct: 178 SLGLTLYSLRVTSTDASFTEYLLSTDPIPSSCIHKIITVDYFSIYWISKCEISKCTTTED 237

Query: 236 IAELTERMRETWRAGHA--YVLAPTSARARVC--RERTEQPLRCRERPRLACQLTLDTVL 291
           I    + +  +     A  Y+L P  A A V   R  T+Q ++ R +      L+++ + 
Sbjct: 238 IFSYLKNLIPSAEKSPAYNYILKPLRATAHVVLFRHPTDQIMQLRGK------LSVEEIS 291

Query: 292 LNLTSRQYSEAVGCALGLERIGRVREFRALRPSVPVKGHVRDWWIYAL 339
           + L+   Y   +G       + + + +   RP    K    +W+ YA+
Sbjct: 292 ITLSDHMYYSLLGVIDYFRVVMKQQYYLQYRPKSTPKEKPLEWFKYAI 339


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score =  111 bits (267), Expect = 7e-25
 Identities = 92/329 (27%), Positives = 156/329 (47%), Gaps = 29/329 (8%)

Query: 1   MLEGLVAWVLNNYLGKYVENLNTDQLSIALLSGKVELENLPLKKDALRHLGLPVEVKAGF 60
           MLEGL+A  LN  LG+Y+EN +  QL +A+ +G V L NL LK+ A R L LP+ V+ G 
Sbjct: 1   MLEGLLANFLNRLLGEYIENFDATQLKVAVWNGDVTLRNLQLKRSAFRKLELPISVQYGL 60

Query: 61  IGKVQLQIPVRQIRSAPWVIAIEKLYLVAAPVNLDEWDSEAEAHHAHERKVALLDALEAQ 120
           + ++ L+IP   +++ P  I I  +  +A+     +  SE + H   E K   +      
Sbjct: 61  VEELTLKIPWSSLKNKPVEIYIVGIRALASMEENVKSQSEVDPHQVLESKRRQMQL---- 116

Query: 121 WRAEHEASDAGYYATSYS-SWLSYGTGLLANIVENLQLKIIDVHLRYE----DTVTCGRA 175
           W    EAS  G   T+Y     ++   L+  +++N+Q+ I D+H+R+E      V  G  
Sbjct: 117 W----EASQIGKAETAYDPKTQTFTESLITRMIDNIQINIRDIHIRFEHLPVSNVVPG-G 171

Query: 176 FACGLTAQSLAAESCDASWKKWFSLLPDPEGRS-HKLLELQQLALYWDPISTPSAMLAEL 234
           ++ GL     + ESC+   ++W S   + E ++ +KL  L+   +Y D     +  + + 
Sbjct: 172 YSFGLLLSEFSIESCN---EEWTSTFVETESQTIYKLCSLRGFGIYSD---ETAECIDKT 225

Query: 235 GIAELTERMR----ETWRAGHAYVLAPTSARARVCRERTEQPLRCRERPRLACQLTLDTV 290
            I EL    +    +       Y++AP +  A+V   +   P    E PR   Q++    
Sbjct: 226 DINELMNTFQALITDFQSREKDYIIAPVTGMAKVTINKLPTP----EIPRFLSQISFRGF 281

Query: 291 LLNLTSRQYSEAVGCALGLERIGRVREFR 319
            ++L   Q S  +  A  L+ +     FR
Sbjct: 282 DVSLNDSQISCGMSLAHELQDVMSKLAFR 310



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 14/129 (10%)

Query: 797 DTLHDSIYDRYKIELSELQILVGRVRDNWKYAHTKTTSSLHLLDRFS--ISLQAERRVLE 854
           +TL+  IYDRY++ L   ++L+G + +  K    K     +L++  +  I +QA+R    
Sbjct: 680 ETLYHLIYDRYRVSLESARLLLGPLNE-LKNESNKINEEYYLMNELNTEIFIQAQR---- 734

Query: 855 TSDPVYPRAALCGSLPALVAHLTEHKLCALRAVLAPLRSEDAPAPQASPATEDDDEASVR 914
              P YPR  + G++P L   L++ +   L  + + +  +         A++DDD    R
Sbjct: 735 VPTPQYPRIKVEGNMPCLSFILSDAQFRILNNLASTMLKD-------GKASDDDDNGDWR 787

Query: 915 SETDRSESS 923
            E+  S  S
Sbjct: 788 PESSESLDS 796


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 891 LRSEDAPAPQASPATEDDDEASVRSETDRSESSSHNNSTIFMLQFAVDQMSL 942
           +++++   PQ SP   D+++  V+S+  R   S   NST  +L   V   SL
Sbjct: 357 IKADEIRKPQESPIFVDEEDTDVQSKPVRKNPSVELNSTDTLLSSTVISKSL 408


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 895 DAPAPQASPATEDDDEASVRSETDRSESSSHNNS 928
           D P+P+ S +  D+DE SV S    +ESSS  +S
Sbjct: 315 DTPSPRRSRSYSDEDEESVYSSDVSTESSSQFSS 348


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 549

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 1200 ENSWGNTSSAWGATGLGWANQE 1221
            E SWGN    WG T   W++ +
Sbjct: 262  EASWGNLDDGWGETNGSWSSTD 283


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,194,365
Number of Sequences: 5004
Number of extensions: 182820
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 9
length of query: 1415
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1333
effective length of database: 1,952,150
effective search space: 2602215950
effective search space used: 2602215950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)