GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002843-TA|BGIBMGA002843-PA|undefined
         (1415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)          228   3e-59
SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)             72   4e-12
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                51   8e-06
SB_9541| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   3e-04
SB_2642| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.13 
SB_41004| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   1.2  
SB_59072| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   2.9  
SB_9385| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   8.8  

>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score =  228 bits (557), Expect = 3e-59
 Identities = 206/838 (24%), Positives = 349/838 (41%), Gaps = 69/838 (8%)

Query: 156 QLKIIDVHLRYED-TVTCGRAFACGLTAQSLAAESCDASWKKWFSLLPDPEGRSHKLLEL 214
           QL I DVH+RYED ++     FACG+T   LAA+S +  W+    ++ +     +KL++L
Sbjct: 121 QLVISDVHIRYEDASIDQHTPFACGITIDRLAAQSTNDKWETE-EVIQNDHSIKYKLIDL 179

Query: 215 QQLALYWDPISTPSAMLAELGIAELTERMRETWRAGHAYVLAPTSARARVCRERTEQPLR 274
           Q  A+YWD   + + ++ +L   +L +         H+Y+L   SA A++ R  T  PLR
Sbjct: 180 QNFAIYWD---SDAPLVGDLPSTKLEK---------HSYILESISASAKLQRNATALPLR 227

Query: 275 CRERPRLACQLTLDTVLLNLTSRQYSEAVGCALGLERIGRVREFRALRPSVPVKGHVRDW 334
            +  PR    + ++ + L+L   QY   +      ER  R   +   RP VPVK + + W
Sbjct: 228 DKN-PRFVVDVHVERIPLSLAEVQYRMGMKLMGEFERFFRQARYHKWRPKVPVKNNAKLW 286

Query: 335 WIYALSC--HMPHNRWRHPRPSWXXXXXXXXXXXXYVRVCLQLVTSXXXXXXXXXXXXXX 392
           W +A +C  H    R RH   S+            YV++  + + S              
Sbjct: 287 WQFASTCILHFIQERNRHHTLSF--ATKRAHDLVVYVKLYTEHLMS--NQLESAKKEELE 342

Query: 393 XFEWNTPLHVLKPLREIAMRSVPK-------TTPVSSPDRPSSGRSMLVH-WFPQWWGWY 444
             E       L  LR +AMR   K       +TP  +P  PS   S     W   W+ WY
Sbjct: 343 RIEQELSFEELAVLRRLAMRKAEKALELVKASTPDVAPVAPSEPTSTASQGWLGGWYSWY 402

Query: 445 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELEEEILDVIADSLENNTLLKKDM 504
                                               + EEE LD ++D   N ++  +D 
Sbjct: 403 -------WSADGAAPSKTGDATDNTKPPFKIEPPSTKEEEEFLDELSDPSRNQSIFNRDK 455

Query: 505 VFGKFDFVLNKGSFNLLMDSEDGEESG--VELEFVCVRVQTEWRPRGGAAGVHVSLGSLC 562
           VF + +  L+ GSF LL  +  G  S   VE+EF     ++E RP+      ++SLG++ 
Sbjct: 456 VFARLNICLDSGSFKLLNSTSSGHSSTPIVEVEFCNATWESEVRPQSSTWEFNMSLGAIH 515

Query: 563 LTERITPGTLFPVVCAPQGVIRXXXXXXXXXXXXXXXXXXXWCRXXXXXXXXXXXXXSEP 622
             +R T GTLF  + +PQ                                        EP
Sbjct: 516 ARDRFTKGTLFASLVSPQ----ERKPLAAQKSSNHSSISMLGMSSTALGLNILQEFDEEP 571

Query: 623 LFQLAYEKKPIGLNCDYKLWVKSASLEVVY-CEALARWAQRFARRGWDAR---LALDSTR 678
           +F+  +E+ P       +  + +  L++V+    + R +  F+     A+   +      
Sbjct: 572 VFENEFEQMPPKSKVANRFSITTQPLDIVWNPSVIDRVSDFFSNDTLSAQYVNVERQLRE 631

Query: 679 ATLINHFEHMVHAHSVRHRSCYLLSER------SSWHVELDIWAPQILLVEQLCSRDSAL 732
           A  + + E      +   ++   + E        SW ++L++ AP+  + E    R S++
Sbjct: 632 AAWLRYEELKNQTKAELKQTLDSMMEGVQIGNVKSWDIQLEVSAPRFFVPENFKDRKSSV 691

Query: 733 LLVDFGRLRLANA-----NQDLTHHAPAD-DEEMFMTPCXXXXXXXXXXXXXXXXXXXXX 786
           +LVDFG L   N+      + ++     D +++ F+TP                      
Sbjct: 692 VLVDFGHLSFKNSEAMEREKRISEEEDTDVEDDSFVTPMSTPPSEQEDENDAGICSTESA 751

Query: 787 XXXXXXALHPDTLHDSIYDRYKIELSELQILVGRVRDNWK--YAHTKTTSSLHLLDRFSI 844
                  L+P+ + +++YD+Y +  S++Q++V   RD W    +H   +S LH++DRF+I
Sbjct: 752 MRLAEN-LNPEKIKEAMYDKYMLVFSDIQMVVCHARDKWSDVTSHHFGSSDLHVVDRFTI 810

Query: 845 SLQAERRVLETSDPVYPRAALCGSLPALVAHLTEHKLCAL----RAVLAPLRSEDAPAPQ 900
            L  ERR++ T+DP  P   L G+LP+L  H+ E+K  AL      ++ P +S   P   
Sbjct: 811 KLTLERRLIFTADPQCPAVLLSGNLPSLTFHVNEYKCHALTKCFNQLIRPSKSPTVPPRD 870

Query: 901 ---ASPATEDDDEASVRSETDRSESSSHNNSTIFMLQFAVDQMSLEVQSRGRSIAEVQ 955
               + +T         SE D + S      +++  Q  +D  S ++ SR  S A ++
Sbjct: 871 MRAMATSTPLRHPQGPASEFDMNHSMDELYYSMYSSQVTLDD-SADILSRKTSEAVLE 927



 Score =  142 bits (344), Expect = 2e-33
 Identities = 70/123 (56%), Positives = 93/123 (75%), Gaps = 3/123 (2%)

Query: 1   MLEGLVAWVLNNYLGKYVENLNTDQLSIALLSGKVELENLPLKKDALRHLGLPVEVKAGF 60
           MLEGL AW+L  Y+G+YVENLNT+QLSI +  G V+L NLPLKK AL+ L LP+EVK+GF
Sbjct: 1   MLEGLAAWILRTYVGEYVENLNTEQLSIGV--GTVDLHNLPLKKTALQGLDLPLEVKSGF 58

Query: 61  IGKVQLQIPVRQIRSAPWVIAIEKLYLVAA-PVNLDEWDSEAEAHHAHERKVALLDALEA 119
           IG +QL IP+R+ +S PW+I I+KLYLVA  P++ +E++ + EA     RK   LD LE+
Sbjct: 59  IGHLQLSIPLRRPKSEPWIINIDKLYLVAGPPLHNNEYNEQQEAEREWIRKKRQLDLLES 118

Query: 120 QWR 122
           QW+
Sbjct: 119 QWQ 121



 Score = 57.2 bits (132), Expect = 9e-08
 Identities = 33/91 (36%), Positives = 45/91 (49%)

Query: 910  EASVRSETDRSESSSHNNSTIFMLQFAVDQMSLEVQSRGRSIAEVQVCGVKMAATARPRD 969
            EA + S  +         S   ++QF +D++S  V SR R IAE+QV  V      RP D
Sbjct: 923  EAVLESALESKTKELLVESRQMVVQFTIDRVSCAVHSRARLIAELQVHRVATEYLKRPYD 982

Query: 970  XXXXXXXXXXXXXDALQTYGPDFELLVASHK 1000
                         DA+Q YGP+F+LLV+S K
Sbjct: 983  SSVSFKVHGLYLVDAIQCYGPEFDLLVSSSK 1013


>SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)
          Length = 810

 Score = 71.7 bits (168), Expect = 4e-12
 Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 4/132 (3%)

Query: 799 LHDSIYDRYKIELSELQILVGRVRDNWKYAHTKTTSSLHLLDRFSISLQAERRVLETSDP 858
           L    YD++ I L +LQ+L+ +  D+W  A  +T S LH+++  SI L+ + + L   D 
Sbjct: 683 LESKCYDKFDIRLEQLQVLLAKEGDDWNAARQQTQSKLHIVNPISIDLKLQ-KALNPDDV 741

Query: 859 VYPRAALCGSLPALVAHLTEHKLCALRAVLAPLRSEDAPAPQASPATEDDDEASVRSETD 918
              +  L GSL ++  H+T+ KL  L     P  ++ A A + SP  +DDD+     + D
Sbjct: 742 RLAQIKLAGSLHSIDVHITDKKL-DLAVQKVPKSAKIAGALETSPGNKDDDDDD--DDDD 798

Query: 919 RSESSSHNNSTI 930
             E S+ N S +
Sbjct: 799 DEEFSTPNGSPV 810


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 50.8 bits (116), Expect = 8e-06
 Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 17/217 (7%)

Query: 12  NYLGKYVENLNTDQLSIALLSGKVELENLPLKKDAL-RHLGLPVEVKAGFIGKVQLQIPV 70
           +Y+ KY++NL    LS+++  G V L NL L  D + + L LP+   +G I K+Q+ +P 
Sbjct: 2   SYVDKYIKNLKPSDLSLSIWGGDVVLYNLELNLDVIEKELQLPITFLSGRIHKLQIHVPW 61

Query: 71  RQIRSAPWVIAIEKLYLVAAPVNLDEWDSEAEAHHAHERKVALLDALEAQWRAEHEASDA 130
            ++ S    I I  L  V   V L +  +    H      +A   A   +   E    D 
Sbjct: 62  TKLGSEAVKITINTLECV---VQLRD-PAYKPDHPDTTTSLAAFRAEAKEACEEKHLQDR 117

Query: 131 GYYATSYSSWLSYGTGLLANIVENLQLKIIDVHLRY-EDTVTCGRAFACGLTAQSLAAES 189
           G           Y   L+  +  N+ + I +V L+Y ED +         L  +S    S
Sbjct: 118 GDPPPP-----GYVQSLVNRVANNISVCIHNVILKYVEDDI------VLSLNIKSADVFS 166

Query: 190 CDASWKKWFSLLPDPEGRSHKLLELQQLALYWDPIST 226
            +  W++ F  +  P+   H++  +  L +  D  +T
Sbjct: 167 VNEKWERAFVDITAPDYVLHRVCSISDLTVCLDKKNT 203


>SB_9541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 45.6 bits (103), Expect = 3e-04
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 1  MLEGLVAWVLNNYLGKYVENLNTDQLSIALLSGKVELENLPLKKDAL 47
          M E LV  VLN+ LG+Y+ +L++  L +A+L G+  L +L L+ DAL
Sbjct: 1  MFEQLVVSVLNSVLGRYIRDLDSSNLELAVLQGQAVLRDLELRDDAL 47


>SB_2642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 36.7 bits (81), Expect = 0.13
 Identities = 12/56 (21%), Positives = 33/56 (58%)

Query: 797 DTLHDSIYDRYKIELSELQILVGRVRDNWKYAHTKTTSSLHLLDRFSISLQAERRV 852
           D L +  YD++ ++++++Q+++     +W   H ++++  H+L    + LQA + +
Sbjct: 134 DELAEMFYDKFDVKVTDVQLILAEKGSDWHSLHVQSSTPEHILPATCMELQAYKSI 189


>SB_41004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 65  QLQIPVRQIRSAPWVIAIEKLYLVAAPVNLDEWDSE-AEAHHAHERKVALLDALEAQWRA 123
           QL + V       ++  ++   L  A +    +D+E A A     ++  L    E+  + 
Sbjct: 4   QLVVSVLNSVLGRYIRDLDSSNLELAVLQEQPYDAEKARASELAVQRKRLRQIEESLAKK 63

Query: 124 EHEASDAGYYATSYSSWLSYGTGLLANIVENLQLKIIDVHLRYEDTVT 171
             E++D   +A +  S++     L+A +++NL++ + ++H+RYED V+
Sbjct: 64  ATESTDGIAHAENGDSFVEK---LMAQVIKNLKVSVKNIHMRYEDQVS 108



 Score = 32.7 bits (71), Expect = 2.2
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 1  MLEGLVAWVLNNYLGKYVENLNTDQLSIALL 31
          M E LV  VLN+ LG+Y+ +L++  L +A+L
Sbjct: 1  MFEQLVVSVLNSVLGRYIRDLDSSNLELAVL 31


>SB_59072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 235 GIAELTERMRETWRAGHAYVLAPTSARARVCRERTEQPLRCRERPRLA--CQLTLDTVLL 292
           G  ++   MR+  R G+A + +P      V   RT + + C   P     CQ    +VLL
Sbjct: 125 GFEKVLRSMRDDVRTGYAMLTSPNKDETAVHGCRTARVIDCASVPSWPDWCQCVYASVLL 184

Query: 293 NLTSRQYS 300
             TS ++S
Sbjct: 185 KSTSTEFS 192


>SB_9385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 30.7 bits (66), Expect = 8.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 851 RVLETSDPVYPRAALCGSLPALVAHLT 877
           R+L T DP++P  A CG++ AL + L+
Sbjct: 131 RILSTHDPLHPMLAKCGAIKALCSILS 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.133    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,871,841
Number of Sequences: 59808
Number of extensions: 1366976
Number of successful extensions: 2867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2834
Number of HSP's gapped (non-prelim): 23
length of query: 1415
length of database: 16,821,457
effective HSP length: 91
effective length of query: 1324
effective length of database: 11,378,929
effective search space: 15065701996
effective search space used: 15065701996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)