GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002842-TA|BGIBMGA002842-PA|undefined
         (349 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   0.82 
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   7.6  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 36  TQTHQHIKDFQENLRDVEESNLVQEDRYEKLVGLGSH 72
           T  H  IK  + N +D+++ ++  +DR + L+G   H
Sbjct: 181 TDMHGRIKS-ERNGKDLDDDDMNDDDRKDDLLGNNMH 216


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 278 DKKPQYRYSGCHGQDASALSIVLGLRAGFEEAQYAGGRAAWRRETDE 324
           D +  Y+Y G +         + GL+A + +     G A W  +TD+
Sbjct: 301 DAQVPYKYDGTNWVSYDDEQSI-GLKAKYAKDNGLAGVAVWSIDTDD 346


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,880
Number of Sequences: 317
Number of extensions: 3146
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 349
length of database: 114,650
effective HSP length: 57
effective length of query: 292
effective length of database: 96,581
effective search space: 28201652
effective search space used: 28201652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)