GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002842-TA|BGIBMGA002842-PA|undefined
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    29   1.3  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   3.0  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.0  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   6.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   9.2  

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 206 RRAAVTSLTHPRMFHYFHADVDDFLFVQMLDVSKLVVAETPALPDVMR 253
           RR A ++L   R+F+Y++ D+ D + +Q      L + ETP+ P V R
Sbjct: 560 RRLATSTLI--RLFYYYY-DLRDAVPIQETLAKMLEILETPSFPFVSR 604


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 8/33 (24%), Positives = 21/33 (63%)

Query: 233 QMLDVSKLVVAETPALPDVMRPWIQCALTVECI 265
           +++ +  LV+  TP +PD+ + + +C++   C+
Sbjct: 301 KLISIKGLVLRCTPVIPDMKQAFFRCSVCGHCV 333


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 163 HALSRVGGVIFSEPSLRWAGSAGALGGVWERARASR 198
           H+LSR G  +     + WA S  A GG   + R+ R
Sbjct: 500 HSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFR 535


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 23  FHSQPPQSIQSIVTQTHQHIKDFQENLRDVEESNLVQEDRYEK 65
           FHS+  Q I    T     ++  Q+N ++++ES   + +  EK
Sbjct: 278 FHSRDSQPITQRHTDIESRLQKMQDNAKELDESRRKKIELLEK 320


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 128  YCNSSKCAIIDFDLDAFPSHVSDESIYAFRP 158
            +   S C  I F++D +P H  DE +Y   P
Sbjct: 1294 FITKSLCGEI-FEIDKWPFHFDDEYLYTCHP 1323


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,099
Number of Sequences: 5004
Number of extensions: 61438
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 5
length of query: 349
length of database: 2,362,478
effective HSP length: 73
effective length of query: 276
effective length of database: 1,997,186
effective search space: 551223336
effective search space used: 551223336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)