GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002842-TA|BGIBMGA002842-PA|undefined
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1510 - 34088431-34088718,34089158-34089295,34089413-340894...    33   0.26 
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006...    29   4.2  
05_03_0309 + 12130256-12130657                                         29   5.5  
04_01_0328 - 4330904-4333129                                           29   7.3  
12_01_0862 + 8161117-8163913,8164000-8164019                           28   9.7  
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    28   9.7  
06_01_0973 + 7530436-7530510,7530566-7531297                           28   9.7  

>04_04_1510 -
           34088431-34088718,34089158-34089295,34089413-34089498,
           34090339-34090466,34091656-34091900
          Length = 294

 Score = 33.5 bits (73), Expect = 0.26
 Identities = 17/35 (48%), Positives = 20/35 (57%)

Query: 169 GGVIFSEPSLRWAGSAGALGGVWERARASRVGVVA 203
           GG   +  +LRWAG AG LGG    A  + VG VA
Sbjct: 8   GGAAAAARTLRWAGRAGHLGGFPRAAVIAAVGAVA 42


>08_02_0052 +
           11699468-11699700,11699799-11699916,11699991-11700659,
           11700741-11700842,11700921-11701181,11701838-11702009,
           11702128-11702528,11703171-11703587
          Length = 790

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 67  VGLGSHVEPWKNCTKPVLLTYARGDQHAQVVGFVRAAAKLPYTILLYNLGLKSYSLTVVS 126
           + L S  E   N +  +LL  AR D    ++ + R      ++I+  N GL   ++ +VS
Sbjct: 646 ISLISPREMGGNISNTLLLQEARTDLSGSLIVYARTDVNTVHSIM--NSGLNPATVFLVS 703

Query: 127 NYCNSSKCAIIDFDLDAFPSH 147
                S CAI+   L++FP H
Sbjct: 704 -----SGCAILPDCLESFPLH 719


>05_03_0309 + 12130256-12130657
          Length = 133

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 12 SVFAISIFLIVFHSQPPQSIQSIVTQTHQHIKDFQENLRDVEESNLVQEDRY 63
          S+F +S  L  F+  PP S   I+T +++   +F   +R++  S L QE+ Y
Sbjct: 5  SIFQLSAPLGEFYEPPPSS-DPILTPSNEIRPEFISMVREISFSGLGQENPY 55


>04_01_0328 - 4330904-4333129
          Length = 741

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 148 VSDESIYAFRPLIIQHALSRVGGVIFSEPSLRWAGSAGAL 187
           +  E++ A R L   HA++ VG +  S+   +W G  G L
Sbjct: 363 IRHEALCASRWLRFHHAMASVGRIANSQAHRKWCGKMGQL 402


>12_01_0862 + 8161117-8163913,8164000-8164019
          Length = 938

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 240 LVVAETPALPDVMRPWIQCALTVECIMPIGAQSA 273
           + V++T  + ++MR  IQCAL   C   +G+ S+
Sbjct: 231 VTVSQTYDITEIMRKIIQCALKDTCSADLGSMSS 264


>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 20  LIVFHSQPPQSIQSI--VTQTHQHIKDFQENLRDVEESNLVQED 61
           L VF  + P+  Q +     THQ  KDF+E + D    N++ ++
Sbjct: 92  LYVFEMREPRLCQIVCKTALTHQEAKDFREKIDDEYRINMILDN 135


>06_01_0973 + 7530436-7530510,7530566-7531297
          Length = 268

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 184 AGALGGVWERARASRVGVVAWPRRAAVTSLTHP 216
           AGA GG  E+ R  RVG    PR  A    +HP
Sbjct: 194 AGAEGGKEEKGRGGRVGGPPPPRGTASPPCSHP 226


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,089,119
Number of Sequences: 37544
Number of extensions: 418858
Number of successful extensions: 1133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1129
Number of HSP's gapped (non-prelim): 7
length of query: 349
length of database: 14,793,348
effective HSP length: 83
effective length of query: 266
effective length of database: 11,677,196
effective search space: 3106134136
effective search space used: 3106134136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)