GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002842-TA|BGIBMGA002842-PA|undefined
         (349 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064997-1|AAH64997.1|  837|Homo sapiens NCKAP1L protein protein.      31   6.0  
AK128150-1|BAC87299.1|  283|Homo sapiens protein ( Homo sapiens ...    31   8.0  

>BC064997-1|AAH64997.1|  837|Homo sapiens NCKAP1L protein protein.
          Length = 837

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 49  LRDVEESNLVQEDRYEKLVGLGSHVEPWKNCTKPVLLTYARGDQHAQVVGFVRAAAKLPY 108
           +RDV + + V ED +  L G G  V   K   + V+     G  H Q   F+R A K   
Sbjct: 5   VRDVLQVHKVTEDLFSSLKGYGKRVADIKESKEHVIAN--SGQFHCQRRQFLRMAVKELE 62

Query: 109 TILLYNLGL 117
           T+L    GL
Sbjct: 63  TVLADEPGL 71


>AK128150-1|BAC87299.1|  283|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46273 fis, clone TESTI4029023. ).
          Length = 283

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 131 SSKCAIIDFDLDAFPSHVSDESIYAFRPLIIQHALSRVGGVIFSEPSLRWAGSAGALGGV 190
           S  CA++   LD     +    +++ RP + +   S + G   + P LR       LG V
Sbjct: 96  SRPCALVLTGLDV----LRGLGVHSSRPFLHRRGFSDLEGQAAAAPKLRAPSHHAQLGPV 151

Query: 191 WERARASRVGVVAW 204
           W  A + RV V AW
Sbjct: 152 WAAAPSHRV-VQAW 164


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,558,492
Number of Sequences: 224733
Number of extensions: 2012397
Number of successful extensions: 7298
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7297
Number of HSP's gapped (non-prelim): 3
length of query: 349
length of database: 73,234,838
effective HSP length: 91
effective length of query: 258
effective length of database: 52,784,135
effective search space: 13618306830
effective search space used: 13618306830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 66 (30.7 bits)