GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002841-TA|BGIBMGA002841-PA|IPR001315|Caspase
Recruitment, IPR002138|Peptidase C14, caspase non-catalytic subunit
p10, IPR001309|Caspase, p20 subunit, IPR011600|Peptidase C14, caspase
catalytic, IPR002398|Peptidase C14, caspase precursor p45,
IPR011029|DEATH-like
         (410 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    28   0.11 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   5.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   5.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   5.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   5.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   5.2  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 220 AGYECVFLVVSSHGHERRYSSDTDIRCSDG 249
           AGY C   V+ S+  + R   DT   CSDG
Sbjct: 593 AGYPCHLFVMISNYADDRVEQDTSGTCSDG 622


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 41  EPYRDTSITPRERKRILY 58
           EPY D + T + R+R LY
Sbjct: 196 EPYVDVTFTIKIRRRTLY 213


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 41  EPYRDTSITPRERKRILY 58
           EPY D + T + R+R LY
Sbjct: 196 EPYVDVTFTIKIRRRTLY 213


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 41  EPYRDTSITPRERKRILY 58
           EPY D + T + R+R LY
Sbjct: 196 EPYVDVTFTIKIRRRTLY 213


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 41  EPYRDTSITPRERKRILY 58
           EPY D + T + R+R LY
Sbjct: 196 EPYVDVTFTIKIRRRTLY 213


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 41  EPYRDTSITPRERKRILY 58
           EPY D + T + R+R LY
Sbjct: 196 EPYVDVTFTIKIRRRTLY 213


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.138    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,142
Number of Sequences: 317
Number of extensions: 3765
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 410
length of database: 114,650
effective HSP length: 58
effective length of query: 352
effective length of database: 96,264
effective search space: 33884928
effective search space used: 33884928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)