GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002841-TA|BGIBMGA002841-PA|IPR001315|Caspase
Recruitment, IPR002138|Peptidase C14, caspase non-catalytic subunit
p10, IPR001309|Caspase, p20 subunit, IPR011600|Peptidase C14, caspase
catalytic, IPR002398|Peptidase C14, caspase precursor p45,
IPR011029|DEATH-like
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    28   2.8  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    28   2.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   4.8  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   6.4  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   8.4  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 4   EHKKAIQRNFSSL-VEGTDLDSMVMALYEKGVFSQQMIEPYRDTSITPRERKRILYREIT 62
           E ++  ++  SSL  E + L S+++ + EK +     I+P     I   E   ILY E+ 
Sbjct: 282 EDREVAEKLLSSLETERSKLSSLLLKMQEKELEGSDSIDPILLEKIDVCEENIILYTELL 341

Query: 63  R 63
           R
Sbjct: 342 R 342


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 26  VMALYEKGVFSQQMIEPYRDTSI-TPRERKRILYREIT-RRG 65
           V +LY++   S +++EPY D +I TP E   I+ +++  +RG
Sbjct: 657 VFSLYKRSPKSFRILEPYMDVTITTPEEYVGIVSKDLVGKRG 698


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 52  ERKRILYREITRRGPQAFTMLLEALREMGHWDLVRD 87
           + +RIL     ++ P    +LL+A   +  WDL++D
Sbjct: 509 QSERILSNLAEKKNPNTDQLLLQANSYLAQWDLLKD 544


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 261 FNNRKLPNFTDLPKVFIFQACRGENEDFVQGGGALAPAPQVARDGA 306
           F  R+L N T   KV++F  CR +  D +  G    P  + + D A
Sbjct: 412 FVQRRLTNATCAGKVWVFHGCRDQELDELYHGEWENPLQKSSDDDA 457


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 215 MSSVLAGYECVFLVVSSHGHERRYSSDTDIRCSDG 249
           +  VL GY C        G  + Y+   D+  SDG
Sbjct: 144 LEQVLNGYNCTIFAYGQTGTGKTYTMSGDLSDSDG 178


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,169
Number of Sequences: 5004
Number of extensions: 72846
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 6
length of query: 410
length of database: 2,362,478
effective HSP length: 74
effective length of query: 336
effective length of database: 1,992,182
effective search space: 669373152
effective search space used: 669373152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)