Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002841-TA|BGIBMGA002841-PA|IPR001315|Caspase
Recruitment, IPR002138|Peptidase C14, caspase non-catalytic subunit
p10, IPR001309|Caspase, p20 subunit, IPR011600|Peptidase C14, caspase
catalytic, IPR002398|Peptidase C14, caspase precursor p45,
IPR011029|DEATH-like
(410 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81049-1|CAB61001.2| 503|Caenorhabditis elegans Hypothetical pr... 99 5e-21
L29052-1|AAA27982.2| 503|Caenorhabditis elegans cell death prot... 99 5e-21
AF210702-1|AAG42045.1| 503|Caenorhabditis elegans caspase CED-3... 99 5e-21
Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical p... 60 2e-09
AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-relat... 60 2e-09
Z93393-12|CAD18879.1| 268|Caenorhabditis elegans Hypothetical p... 60 4e-09
AF088286-1|AAC98293.1| 268|Caenorhabditis elegans caspase-relat... 60 4e-09
AF088289-1|AAC98296.1| 263|Caenorhabditis elegans caspase-relat... 57 2e-08
AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-relat... 57 2e-08
AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase prote... 57 2e-08
AL032657-6|CAA21735.3| 139|Caenorhabditis elegans Hypothetical ... 49 7e-06
AF088290-1|AAC98297.1| 139|Caenorhabditis elegans caspase-relat... 49 7e-06
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 34 0.16
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 34 0.16
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 7.9
>Z81049-1|CAB61001.2| 503|Caenorhabditis elegans Hypothetical
protein C48D1.2 protein.
Length = 503
Score = 99.1 bits (236), Expect = 5e-21
Identities = 79/250 (31%), Positives = 110/250 (44%), Gaps = 18/250 (7%)
Query: 149 LYRTRSRKRGVLVVFSYISFLLNIEPNRDGVNVDCDKLKYLFSEIGFEVLTYQNLTLEQT 208
+YR S RG+ ++ + F P R+G D D L LF +G+ V+ NLT
Sbjct: 234 MYRNFSSPRGMCLIINNEHF--EQMPTRNGTKADKDNLTNLFRCMGYTVICKDNLTGRGM 291
Query: 209 RATLEQMSSVLAGYECVFLVVSSHGHERRYSSDTDIRCSDGKFISLYAIVDYFNNRKLPN 268
T+ + + + LV+ SHG E DI IS + I D N P
Sbjct: 292 LLTIRDFAKHESHGDSAILVILSHGEENVIIGVDDIP------ISTHEIYDLLNAANAPR 345
Query: 269 FTDLPKVFIFQACRGENED-------FVQGGGALAPAPQVARDGAVXXXXXXXXXXXXXX 321
+ PK+ QACRGE D V G A RDG +
Sbjct: 346 LANKPKIVFVQACRGERRDNGFPVLDSVDGVPAFLRRGWDNRDGPLFNFLGCVRPQVQQV 405
Query: 322 XXXEKPLYSNILIANSTLPGFISHRDVKAGSWYIQVLCEVFAERAHDCHVDELFTLVDKR 381
+KP ++ILIA +T ++S R+ GSW+IQ +CEVF+ A D V EL T V+K+
Sbjct: 406 WR-KKPSQADILIAYATTAQYVSWRNSARGSWFIQAVCEVFSTHAKDMDVVELLTEVNKK 464
Query: 382 LRLRFGRQTS 391
+ F QTS
Sbjct: 465 VACGF--QTS 472
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MQEEHKKAIQRNFSSLVEGTDLDSMVMALYEKGVFSQQMIEPYRDTSITPRERKRILYRE 60
M+++ + ++RN +D ++ L K V + + T RE++R + +
Sbjct: 2 MRQDRRSLLERNIMMFSSHLKVDEILEVLIAKQVLNSDNGDMINSCG-TVREKRREIVKA 60
Query: 61 ITRRGPQAFTMLLEALREMGHWDLVRDLDP 90
+ RRG AF +ALR GH L L+P
Sbjct: 61 VQRRGDVAFDAFYDALRSTGHEGLAEVLEP 90
>L29052-1|AAA27982.2| 503|Caenorhabditis elegans cell death protein
protein.
Length = 503
Score = 99.1 bits (236), Expect = 5e-21
Identities = 79/250 (31%), Positives = 110/250 (44%), Gaps = 18/250 (7%)
Query: 149 LYRTRSRKRGVLVVFSYISFLLNIEPNRDGVNVDCDKLKYLFSEIGFEVLTYQNLTLEQT 208
+YR S RG+ ++ + F P R+G D D L LF +G+ V+ NLT
Sbjct: 234 MYRNFSSPRGMCLIINNEHF--EQMPTRNGTKADKDNLTNLFRCMGYTVICKDNLTGRGM 291
Query: 209 RATLEQMSSVLAGYECVFLVVSSHGHERRYSSDTDIRCSDGKFISLYAIVDYFNNRKLPN 268
T+ + + + LV+ SHG E DI IS + I D N P
Sbjct: 292 LLTIRDFAKHESHGDSAILVILSHGEENVIIGVDDIP------ISTHEIYDLLNAANAPR 345
Query: 269 FTDLPKVFIFQACRGENED-------FVQGGGALAPAPQVARDGAVXXXXXXXXXXXXXX 321
+ PK+ QACRGE D V G A RDG +
Sbjct: 346 LANKPKIVFVQACRGERRDNGFPVLDSVDGVPAFLRRGWDNRDGPLFNFLGCVRPQVQQV 405
Query: 322 XXXEKPLYSNILIANSTLPGFISHRDVKAGSWYIQVLCEVFAERAHDCHVDELFTLVDKR 381
+KP ++ILIA +T ++S R+ GSW+IQ +CEVF+ A D V EL T V+K+
Sbjct: 406 WR-KKPSQADILIAYATTAQYVSWRNSARGSWFIQAVCEVFSTHAKDMDVVELLTEVNKK 464
Query: 382 LRLRFGRQTS 391
+ F QTS
Sbjct: 465 VACGF--QTS 472
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MQEEHKKAIQRNFSSLVEGTDLDSMVMALYEKGVFSQQMIEPYRDTSITPRERKRILYRE 60
M+++ + ++RN +D ++ L K V + + T RE++R + +
Sbjct: 2 MRQDRRSLLERNIMMFSSHLKVDEILEVLIAKQVLNSDNGDMINSCG-TVREKRREIVKA 60
Query: 61 ITRRGPQAFTMLLEALREMGHWDLVRDLDP 90
+ RRG AF +ALR GH L L+P
Sbjct: 61 VQRRGDVAFDAFYDALRSTGHEGLAEVLEP 90
>AF210702-1|AAG42045.1| 503|Caenorhabditis elegans caspase CED-3
protein.
Length = 503
Score = 99.1 bits (236), Expect = 5e-21
Identities = 79/250 (31%), Positives = 110/250 (44%), Gaps = 18/250 (7%)
Query: 149 LYRTRSRKRGVLVVFSYISFLLNIEPNRDGVNVDCDKLKYLFSEIGFEVLTYQNLTLEQT 208
+YR S RG+ ++ + F P R+G D D L LF +G+ V+ NLT
Sbjct: 234 MYRNFSSPRGMCLIINNEHF--EQMPTRNGTKADKDNLTNLFRCMGYTVICKDNLTGRGM 291
Query: 209 RATLEQMSSVLAGYECVFLVVSSHGHERRYSSDTDIRCSDGKFISLYAIVDYFNNRKLPN 268
T+ + + + LV+ SHG E DI IS + I D N P
Sbjct: 292 LLTIRDFAKHESHGDSAILVILSHGEENVIIGVDDIP------ISTHEIYDLLNAANAPR 345
Query: 269 FTDLPKVFIFQACRGENED-------FVQGGGALAPAPQVARDGAVXXXXXXXXXXXXXX 321
+ PK+ QACRGE D V G A RDG +
Sbjct: 346 LANKPKIVFVQACRGERRDNGFPVLDSVDGVPAFLRRGWDNRDGPLFNFLGCVRPQVQQV 405
Query: 322 XXXEKPLYSNILIANSTLPGFISHRDVKAGSWYIQVLCEVFAERAHDCHVDELFTLVDKR 381
+KP ++ILIA +T ++S R+ GSW+IQ +CEVF+ A D V EL T V+K+
Sbjct: 406 WR-KKPSQADILIAYATTAQYVSWRNSARGSWFIQAVCEVFSTHAKDMDVVELLTEVNKK 464
Query: 382 LRLRFGRQTS 391
+ F QTS
Sbjct: 465 VACGF--QTS 472
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MQEEHKKAIQRNFSSLVEGTDLDSMVMALYEKGVFSQQMIEPYRDTSITPRERKRILYRE 60
M+++ + ++RN +D ++ L K V + + T RE++R + +
Sbjct: 2 MRQDRRSLLERNIMMFSSHLKVDEILEVLIAKQVLNSDNGDMINSCG-TVREKRREIVKA 60
Query: 61 ITRRGPQAFTMLLEALREMGHWDLVRDLDP 90
+ RRG AF +ALR GH L L+P
Sbjct: 61 VQRRGDVAFDAFYDALRSTGHEGLAEVLEP 90
>Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical
protein Y48E1B.13a protein.
Length = 536
Score = 60.5 bits (140), Expect = 2e-09
Identities = 73/297 (24%), Positives = 116/297 (39%), Gaps = 26/297 (8%)
Query: 85 VRDLDPNSPLQLRARRPVLP-PTRQGSDAXXXXXXXNSSEPV----AIPCFHVKKSTHFF 139
V LD S L + P+L PT+ A S E +P KKS H
Sbjct: 222 VEFLDVQSSLGSSMKPPILDKPTKLDDPAETRHDCSYSLEEYDSQSRMPRTDAKKSNH-- 279
Query: 140 EDDVSRDIQLYRTRSRKRGVLVVFSYISFLLNIEPNRDGVNVDCDKLKYLFSEIGFEVLT 199
+ Y S RG +++ S +F N+E R G D L LF ++ + V+
Sbjct: 280 -----KHKYCYEMNSNPRGTVLILSNENFK-NME-RRVGTKQDEVNLTKLFQKLQYTVIC 332
Query: 200 YQNLTLEQTRATLEQMSSVLAGYECVFLVVSSHGHERRYSSDTDIRCSDGKFISLYAIVD 259
+NL E +++ + +A + + L + SHG D + +S Y +
Sbjct: 333 KRNLEAESMLEAIKEFAE-MAHTDSIILFLLSHGDGAGSVFGIDDMPVNVMEVSTY--LA 389
Query: 260 YFNNRKLPNFTDLPKVFIFQACRGENEDFVQGGGALAPAPQVARDGAVXXXXXXXXXXXX 319
Y N L PK ACRG + G D
Sbjct: 390 YHQNLLLK-----PKWVAVSACRGGKLNM----GVPVDGLPALEDKCAPISKFWNLMMSR 440
Query: 320 XXXXXEKPLYSNILIANSTLPGFISHRDVKAGSWYIQVLCEVFAERAHDCHVDELFT 376
L ++++I+ ST GF S+RD +AG+WYI+ +C+VF + + H+ ++ T
Sbjct: 441 IMPGTFTSLNADVIISFSTTDGFTSYRDEEAGTWYIKSMCKVFNKHSKTMHLLDILT 497
>AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-related
protein 1A protein.
Length = 536
Score = 60.5 bits (140), Expect = 2e-09
Identities = 73/297 (24%), Positives = 116/297 (39%), Gaps = 26/297 (8%)
Query: 85 VRDLDPNSPLQLRARRPVLP-PTRQGSDAXXXXXXXNSSEPV----AIPCFHVKKSTHFF 139
V LD S L + P+L PT+ A S E +P KKS H
Sbjct: 222 VEFLDVQSSLGSSMKPPILDKPTKLDDPAETRHDCSYSLEEYDSQSRMPRTDAKKSNH-- 279
Query: 140 EDDVSRDIQLYRTRSRKRGVLVVFSYISFLLNIEPNRDGVNVDCDKLKYLFSEIGFEVLT 199
+ Y S RG +++ S +F N+E R G D L LF ++ + V+
Sbjct: 280 -----KHKYCYEMNSNPRGTVLILSNENFK-NME-RRVGTKQDEVNLTKLFQKLQYTVIC 332
Query: 200 YQNLTLEQTRATLEQMSSVLAGYECVFLVVSSHGHERRYSSDTDIRCSDGKFISLYAIVD 259
+NL E +++ + +A + + L + SHG D + +S Y +
Sbjct: 333 KRNLEAESMLEAIKEFAE-MAHTDSIILFLLSHGDGAGSVFGIDDMPVNVMEVSTY--LA 389
Query: 260 YFNNRKLPNFTDLPKVFIFQACRGENEDFVQGGGALAPAPQVARDGAVXXXXXXXXXXXX 319
Y N L PK ACRG + G D
Sbjct: 390 YHQNLLLK-----PKWVAVSACRGGKLNM----GVPVDGLPALEDKCAPISKFWNLMMSR 440
Query: 320 XXXXXEKPLYSNILIANSTLPGFISHRDVKAGSWYIQVLCEVFAERAHDCHVDELFT 376
L ++++I+ ST GF S+RD +AG+WYI+ +C+VF + + H+ ++ T
Sbjct: 441 IMPGTFTSLNADVIISFSTTDGFTSYRDEEAGTWYIKSMCKVFNKHSKTMHLLDILT 497
>Z93393-12|CAD18879.1| 268|Caenorhabditis elegans Hypothetical
protein Y48E1B.13b protein.
Length = 268
Score = 59.7 bits (138), Expect = 4e-09
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 14/227 (6%)
Query: 150 YRTRSRKRGVLVVFSYISFLLNIEPNRDGVNVDCDKLKYLFSEIGFEVLTYQNLTLEQTR 209
Y S RG +++ S +F N+E R G D L LF ++ + V+ +NL E
Sbjct: 17 YEMNSNPRGTVLILSNENFK-NME-RRVGTKQDEVNLTKLFQKLQYTVICKRNLEAESML 74
Query: 210 ATLEQMSSVLAGYECVFLVVSSHGHERRYSSDTDIRCSDGKFISLYAIVDYFNNRKLPNF 269
+++ + +A + + L + SHG D + +S Y + Y N L
Sbjct: 75 EAIKEFAE-MAHTDSIILFLLSHGDGAGSVFGIDDMPVNVMEVSTY--LAYHQNLLLK-- 129
Query: 270 TDLPKVFIFQACRGENEDFVQGGGALAPAPQVARDGAVXXXXXXXXXXXXXXXXXEKPLY 329
PK ACRG + G D L
Sbjct: 130 ---PKWVAVSACRGGKLNM----GVPVDGLPALEDKCAPISKFWNLMMSRIMPGTFTSLN 182
Query: 330 SNILIANSTLPGFISHRDVKAGSWYIQVLCEVFAERAHDCHVDELFT 376
++++I+ ST GF S+RD +AG+WYI+ +C+VF + + H+ ++ T
Sbjct: 183 ADVIISFSTTDGFTSYRDEEAGTWYIKSMCKVFNKHSKTMHLLDILT 229
>AF088286-1|AAC98293.1| 268|Caenorhabditis elegans caspase-related
protein 1B protein.
Length = 268
Score = 59.7 bits (138), Expect = 4e-09
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 14/227 (6%)
Query: 150 YRTRSRKRGVLVVFSYISFLLNIEPNRDGVNVDCDKLKYLFSEIGFEVLTYQNLTLEQTR 209
Y S RG +++ S +F N+E R G D L LF ++ + V+ +NL E
Sbjct: 17 YEMNSNPRGTVLILSNENFK-NME-RRVGTKQDEVNLTKLFQKLQYTVICKRNLEAESML 74
Query: 210 ATLEQMSSVLAGYECVFLVVSSHGHERRYSSDTDIRCSDGKFISLYAIVDYFNNRKLPNF 269
+++ + +A + + L + SHG D + +S Y + Y N L
Sbjct: 75 EAIKEFAE-MAHTDSIILFLLSHGDGAGSVFGIDDMPVNVMEVSTY--LAYHQNLLLK-- 129
Query: 270 TDLPKVFIFQACRGENEDFVQGGGALAPAPQVARDGAVXXXXXXXXXXXXXXXXXEKPLY 329
PK ACRG + G D L
Sbjct: 130 ---PKWVAVSACRGGKLNM----GVPVDGLPALEDKCAPISKFWNLMMSRIMPGTFTSLN 182
Query: 330 SNILIANSTLPGFISHRDVKAGSWYIQVLCEVFAERAHDCHVDELFT 376
++++I+ ST GF S+RD +AG+WYI+ +C+VF + + H+ ++ T
Sbjct: 183 ADVIISFSTTDGFTSYRDEEAGTWYIKSMCKVFNKHSKTMHLLDILT 229
>AF088289-1|AAC98296.1| 263|Caenorhabditis elegans caspase-related
protein 2B protein.
Length = 263
Score = 57.2 bits (132), Expect = 2e-08
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 20/209 (9%)
Query: 176 RDGVNVDCDKLKYLFSEIGFEVLTYQNLTLEQTRATLEQMSSVLAGYECVFLVVSSHGHE 235
R G + D KL LF +G++ +Y NL + T+ Q + G + + + + SHG +
Sbjct: 42 RIGSDKDKKKLSKLFERLGYQSTSYDNLKSSEILETVRQFTQSNHG-DSLIITIMSHGDQ 100
Query: 236 RRYSSDTDIRCSDGKFISLYAIVDYFNNRKLPNFTDLPKVFIFQACRGENED-FVQGGGA 294
DG + + I+D L PK + CRG+ D V+ G
Sbjct: 101 GLLYG------VDGVPVQMLDIIDLMCTASLAK---KPKWLMCVCCRGDRIDRAVRCDGF 151
Query: 295 LAPAPQVARDGAVXXXXXXXXXXXXXXXXXE-KPLYSNILIANSTLPGFISHRDVKAGSW 353
+ D + +++L++ ST PGF+S RD G+W
Sbjct: 152 I--------DNFFDRFPKFFQFMKSKFPSHQTSSSQADLLVSFSTSPGFLSFRDETKGTW 203
Query: 354 YIQVLCEVFAERAHDCHVDELFTLVDKRL 382
YIQ L V E A D H+ +L ++R+
Sbjct: 204 YIQELYRVIIENAKDTHLADLLMETNRRV 232
>AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-related
protein 2A protein.
Length = 826
Score = 57.2 bits (132), Expect = 2e-08
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 20/209 (9%)
Query: 176 RDGVNVDCDKLKYLFSEIGFEVLTYQNLTLEQTRATLEQMSSVLAGYECVFLVVSSHGHE 235
R G + D KL LF +G++ +Y NL + T+ Q + G + + + + SHG +
Sbjct: 605 RIGSDKDKKKLSKLFERLGYQSTSYDNLKSSEILETVRQFTQSNHG-DSLIITIMSHGDQ 663
Query: 236 RRYSSDTDIRCSDGKFISLYAIVDYFNNRKLPNFTDLPKVFIFQACRGENED-FVQGGGA 294
DG + + I+D L PK + CRG+ D V+ G
Sbjct: 664 GLLYG------VDGVPVQMLDIIDLMCTASLAK---KPKWLMCVCCRGDRIDRAVRCDGF 714
Query: 295 LAPAPQVARDGAVXXXXXXXXXXXXXXXXXE-KPLYSNILIANSTLPGFISHRDVKAGSW 353
+ D + +++L++ ST PGF+S RD G+W
Sbjct: 715 I--------DNFFDRFPKFFQFMKSKFPSHQTSSSQADLLVSFSTSPGFLSFRDETKGTW 766
Query: 354 YIQVLCEVFAERAHDCHVDELFTLVDKRL 382
YIQ L V E A D H+ +L ++R+
Sbjct: 767 YIQELYRVIIENAKDTHLADLLMETNRRV 795
>AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase protein
2 protein.
Length = 826
Score = 57.2 bits (132), Expect = 2e-08
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 20/209 (9%)
Query: 176 RDGVNVDCDKLKYLFSEIGFEVLTYQNLTLEQTRATLEQMSSVLAGYECVFLVVSSHGHE 235
R G + D KL LF +G++ +Y NL + T+ Q + G + + + + SHG +
Sbjct: 605 RIGSDKDKKKLSKLFERLGYQSTSYDNLKSSEILETVRQFTQSNHG-DSLIITIMSHGDQ 663
Query: 236 RRYSSDTDIRCSDGKFISLYAIVDYFNNRKLPNFTDLPKVFIFQACRGENED-FVQGGGA 294
DG + + I+D L PK + CRG+ D V+ G
Sbjct: 664 GLLYG------VDGVPVQMLDIIDLMCTASLAK---KPKWLMCVCCRGDRIDRAVRCDGF 714
Query: 295 LAPAPQVARDGAVXXXXXXXXXXXXXXXXXE-KPLYSNILIANSTLPGFISHRDVKAGSW 353
+ D + +++L++ ST PGF+S RD G+W
Sbjct: 715 I--------DNFFDRFPKFFQFMKSKFPSHQTSSSQADLLVSFSTSPGFLSFRDETKGTW 766
Query: 354 YIQVLCEVFAERAHDCHVDELFTLVDKRL 382
YIQ L V E A D H+ +L ++R+
Sbjct: 767 YIQELYRVIIENAKDTHLADLLMETNRRV 795
>AL032657-6|CAA21735.3| 139|Caenorhabditis elegans Hypothetical
protein Y47H9C.6 protein.
Length = 139
Score = 48.8 bits (111), Expect = 7e-06
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 330 SNILIANSTLPGFISHRDVKAGSWYIQVLCEVFAERAHDCHVDELFTLVDKRL 382
+++L++ ST PGF+S +D +WYIQ L V E A D H+ +L T ++R+
Sbjct: 51 ADLLVSFSTSPGFLSFKDETKDTWYIQELYRVIIENAKDTHLADLLTETNRRV 103
>AF088290-1|AAC98297.1| 139|Caenorhabditis elegans caspase-related
protein 3 protein.
Length = 139
Score = 48.8 bits (111), Expect = 7e-06
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 330 SNILIANSTLPGFISHRDVKAGSWYIQVLCEVFAERAHDCHVDELFTLVDKRL 382
+++L++ ST PGF+S +D +WYIQ L V E A D H+ +L T ++R+
Sbjct: 51 ADLLVSFSTSPGFLSFKDETKDTWYIQELYRVIIENAKDTHLADLLTETNRRV 103
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 34.3 bits (75), Expect = 0.16
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 169 LLNIEPNRDG--VNVDCDKLKYLFSEIGFEVLTYQNLTLEQTRATLEQMSSVLAGYECVF 226
L N+E R G +N +C++LK ++E+G EV ++ L ++ L+++ LA EC
Sbjct: 2884 LANLEQRRRGLEINANCERLKKNWAELGIEVESWDKL-VQHAMQRLQELERNLA--ECQL 2940
Query: 227 LVVSSHGHERRYSSDTDIRCSDGK 250
+ SS + I D K
Sbjct: 2941 HLTSSENEIETMKAVEKIHLEDLK 2964
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 34.3 bits (75), Expect = 0.16
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 169 LLNIEPNRDG--VNVDCDKLKYLFSEIGFEVLTYQNLTLEQTRATLEQMSSVLAGYECVF 226
L N+E R G +N +C++LK ++E+G EV ++ L ++ L+++ LA EC
Sbjct: 2884 LANLEQRRRGLEINANCERLKKNWAELGIEVESWDKL-VQHAMQRLQELERNLA--ECQL 2940
Query: 227 LVVSSHGHERRYSSDTDIRCSDGK 250
+ SS + I D K
Sbjct: 2941 HLTSSENEIETMKAVEKIHLEDLK 2964
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 34.3 bits (75), Expect = 0.16
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 169 LLNIEPNRDG--VNVDCDKLKYLFSEIGFEVLTYQNLTLEQTRATLEQMSSVLAGYECVF 226
L N+E R G +N +C++LK ++E+G EV ++ L ++ L+++ LA EC
Sbjct: 2884 LANLEQRRRGLEINANCERLKKNWAELGIEVESWDKL-VQHAMQRLQELERNLA--ECQL 2940
Query: 227 LVVSSHGHERRYSSDTDIRCSDGK 250
+ SS + I D K
Sbjct: 2941 HLTSSENEIETMKAVEKIHLEDLK 2964
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 340 PGFISHRDVKAGSWYIQVLCEVFAERAHDCHVDELFTLVDKRLRL 384
P +S K+ Y+QVLCE + A H D + +L K++ +
Sbjct: 4723 PILLSSHSAKSLQKYVQVLCEFISNSAKSLH-DIMMSLFQKKIHV 4766
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.138 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,619,083
Number of Sequences: 27539
Number of extensions: 391084
Number of successful extensions: 767
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 22
length of query: 410
length of database: 12,573,161
effective HSP length: 83
effective length of query: 327
effective length of database: 10,287,424
effective search space: 3363987648
effective search space used: 3363987648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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